<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33157

Description Uncharacterized protein
SequenceMAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQQYVPMASQHFQPAGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNTGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESR
Length1029
PositionUnknown
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-1.000
Instability index55.20
Isoelectric point6.74
Molecular weight116112.15
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33157
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     195.58|      39|      40|     231|     269|       1
---------------------------------------------------------------------------
  231-  269 (76.24/52.38)	TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERAD
  272-  310 (75.32/51.64)	TDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAE
  317-  343 (44.02/26.74)	TQSE..TSP.......NSQTSISF...PSSVVKAPSSAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.33|      15|      15|     884|     898|       2
---------------------------------------------------------------------------
  884-  898 (21.72/ 9.39)	ERKRKEEKAKREKER
  900-  914 (19.78/ 7.86)	ERDRRKLKQGRDKER
  971-  985 (21.82/ 9.47)	SKNPHRHNSDRKKPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     193.39|      27|      30|       9|      35|       3
---------------------------------------------------------------------------
    9-   35 (55.72/29.89)	PYSGAQVPH.Q.PPMVGSMD..P.PRGFGPPI
   41-   68 (40.49/19.63)	PLVPAPQPQ.QyVPMASQHF..Q.PAGQGGLI
   72-   96 (37.57/17.66)	GFP.SQ.PL.Q.PPFRPLMH..PlPARPGPP.
   97-  121 (27.20/10.67)	..APSHVP..P.PPQVMSLPnaQ.PSNHIPP.
  149-  174 (32.41/14.18)	SYTFAPSSYgQ.PQLIGNVN..T...GSQQPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     498.40|      65|      66|     478|     542|       4
---------------------------------------------------------------------------
  421-  467 (52.86/30.40)	...EAKNNLSNMS.ASD.L.VG.......AS...DKVPPPVTEETRKDAV..R..GEK....VSDAL...........EEK.T
  478-  542 (97.97/63.13)	KL.EAKNAFKALL.ESA.N.VG.......SDWTWDQALRAIINDRRYGAL..RTLGER.KTAFNEYLG...QKKKQDAEER.R
  544-  613 (80.87/50.72)	KLkKARDDYKKMLeESV.E.LT.......SSTRWSKAVTMFENDERFKAL..ERERDR.KDMFDDHLDelkQKERAKAQEE.R
  619-  677 (70.79/43.40)	.......EYRKFL.ESC.DfIK.......ANTQWRKVQDRLEADERCSRL..DKM.DR.LEIFQEYLN...DLEKEEEEQR.K
  688-  759 (64.54/38.87)	R..KNRDEFRKLM.E.A.D.VAlgtltakTNWR.DYCIK.VKDSPPYMAVasNTSGSTpKDLFEDVVE...ELQKQFQEDKtR
  761-  818 (62.34/37.28)	.....KDAVK..L.RKI.T.LS.......STWTFEDFKASVLEDATSPPI..SDV.NL.KLIFDDLLI...KVKEKEEKEA.K
  820-  879 (69.02/42.13)	RK.RLEDEFFDLL.CSVkE.IS.......ATSTWENCRQLLEGSQEFSSI..GDESIC.RGVFDEFVT...QLKEQ.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.18|      11|      16|     921|     933|       5
---------------------------------------------------------------------------
  929-  945 (12.01/ 8.91)	ADSdhddsaENDSKRSG
 1004- 1014 (17.17/ 8.14)	RDN......RNGSRKNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.75|      20|      21|     370|     390|       6
---------------------------------------------------------------------------
  349-  366 (20.72/ 9.35)	...VEVIVSSPVAV.VPIIAAS
  370-  390 (28.20/20.23)	PAlVSVPSTSPVIT.SSVVANA
  394-  413 (25.83/13.69)	PK..TVDAIAPMIDvSSSIGEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.95|      16|      29|     955|     970|      10
---------------------------------------------------------------------------
  955-  970 (27.96/15.77)	RHQSAHDSLDENEKDR
  986- 1001 (25.99/14.11)	RLASTPESENESRHKR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33157 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESR
2) ASDLVGASDKVPPPVTEETRKDAVRGEKVSDAL
3) GQPQLIGNVNTGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWK
4) MAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQQYVPMASQHFQPAGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPG
880
431
158
1
1029
463
234
138










Molecular Recognition Features






MoRF SequenceStartStop




NANANA