<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33154

Description Uncharacterized protein
SequenceMAAMEGVAMQDQSQQQQQQQQQLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
Length570
PositionHead
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.04
Grand average of hydropathy-0.706
Instability index60.07
Isoelectric point9.16
Molecular weight63053.14
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33154
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     697.48|     176|     179|     218|     394|       1
---------------------------------------------------------------------------
    4-   79 (52.05/ 8.44)	......................................................................................................................................................MEGVAMQDQSQQQQQQQQQLVPPQPVAVERLNQAVVQQLNLEAVKTRAiSLFKAISRI..LEDFDAyartntTPKWQD
   87-  211 (121.67/29.28)	VNLELFNIVDEIRKVSKAfvvhpknvnaenatiLPVMLSSkLLPEMEiDDNSKRE...QLLLGMQNLP......IPSQIEKL.....K.SRI.........DMIG..AACE..SAEKVLA..DTRKA....YCFGTRQ.GPQI.......LPTLDKGQALKIQEQEN.............................................................
  218-  394 (309.73/87.32)	NSGEGLRLPGDQRQMTPA...............LPMHLVD.LLPVGD.GVHTFSD...ASGMYMKNTPpLSSNSIGNQGNLL.....QASGA.........QLIGRSAASP..SAATSATSFDNTTASPVPYANSPRS.GTNM.......MNTPSPQQQQQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQ.SQMQGLGQMSQLHDLQG......QQKFQQ
  395-  567 (214.03/56.76)	.......LHG.QHQMQFS...............QPMGHQQ............FQGrqlASGHVQHG...IGQSQLG.QGNQLnrhlsQFSGAansalfnaaQGTSNSQMIPnmSATVSSQSLLPRMQFGLAGNNPQRShASQMlsdqmfnMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQ.PNAQN.L......Q.SNMVALQNAQQNHPNFA......QQR.QQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33154 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
252
570










Molecular Recognition Features






MoRF SequenceStartStop




NANANA