<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33139

Description Uncharacterized protein
SequenceMDLDDFRSIMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCDFGSGGIVTEAAVARVNGRIHEETEEEEGEAAEEEVREKSVNGDDDDDFDPFAGLFDDEQKSILEIKERLEDPDLSEEALVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPQQKALHNGNRQQVPDFGYSPVPQNGYSGSSKNSNYAEPERKPRPIAPPTRRESPSPAKPSRPSPSQQTIQRDKEHKEVDFDSARKRLQQNYRQAENAKKQRTIQVMDIHEIPKPKKGGFFPRKGGSSQGGRHW
Length348
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-1.060
Instability index62.64
Isoelectric point5.21
Molecular weight39648.36
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33139
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     178.17|      53|      61|     214|     274|       1
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  214-  273 (91.48/74.57)	SPQQKALHNGNRQQVPDFGYSPVP.QNGYSGssknsnyAEPERKPRPIAPPTRRESPSPAK
  278-  331 (86.69/51.74)	SPSQQTIQRDKEHKEVDFDSARKRlQQNYRQ.......AENAKKQRTIQVMDIHEIPKPKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.19|      15|      15|     120|     134|       3
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  120-  134 (24.24/14.82)	KSILEIKERLEDPDL
  137-  151 (23.95/14.56)	EALVELLQNLEDMDI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33139 with Med26 domain of Kingdom Viridiplantae
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