<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33138

Description Uncharacterized protein
SequenceMAVAPPESQQGLWDSVTWLIRSAQEKNVDPLHWALELRLTLSSAGISLPSTDLAHFLVSHIFWENHTPLSWKLLEKSITVNLVHPLLVLALLSLRVIPNRKRHPAAYRLYLELLKRHAFSLIPQIRGPGYHKTMNSIDDILHLSETFGVLDQEPGSILLTFVFSIVWQLVDASLDEEGLLELTSSKRSKWPSGPHDMEIDGLENSVKRNENLDVLEKANTEMAIDLIQDFLQNKITSKILHLASQNMPTHWEDFSQRFRVLATKSLAARSSKHINPEALRQLASHTRKFLERESKTIPRGEFHATVSSGSKLALTSQYHGTSESALWLPIDLFFEDIMDGTQAAAASAVENLTGLVKALQAAISTTWHDAFLALWLAALRLVQRERDPIEGPVPRTDTFLCVLLSVTPLAVANIIEEEESQWIDQSASSPSNQWKEKKGKCRQGLVNSLQQLGDYESLLTPPLSVQSVANQAAAKAVMFISGITNGSGSYENTSMNESASGCCNISCWSLVMKGSPLTPSLTNSLITTPASSLAEIEKMYEVATTGSEDEKIAAASILCGASLFRGWSIQEHVIIFIVTLLSPPAPADLSGSYSHLISSAPFLNVLLVGISPVDCVQIFSLHGVVPLLAGALMPICEAFGSGIPNVTWTLPTGEVISSHAVFSTAFTLLLRLWRFDHPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLECFGKSPKDRMARRRFSKVIDISVEPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKASKGGSQSLTPSSGSSSLSTSGVDDSSDQLKLPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKILADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLASVEQQIEKILAATGVDVPRLPADGISAATLPLPLAALVSLTITYKLEKATERFLVLVGPALDSLAAACPWPCMPIVTSLWTQKVKRWSDFLIFSASRTVFHHNSDAVIQLLRSCFTCTLGLTPTSQLCSYGGVGALLGHGFGSLYPGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIAARELPTEQAERLRKTKDGSRYGIGQVSLSLAMTRVKLAASLGASLVWISGGLNLVQALIKETLPSWFISVHGEEDELGGMVPMLRGYALAYFAILSSAFAWGVDSSSPASKRRPRVLWLHLEFLVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLEVDVGVIKRLSKSLRQWNEEDLALALLCAGGLGTMGAATELIVETCHQL
Length1288
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.08
Grand average of hydropathy0.143
Instability index46.35
Isoelectric point6.10
Molecular weight140516.49
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33138
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     148.55|      52|     120|     902|     957|       1
---------------------------------------------------------------------------
  242-  268 (35.00/13.57)	...........................LASQNMPTHWEDFSQRFRVL...ATKSLAA
  833-  862 (31.33/10.93)	AHGSLSPRELATGlkILADFLPATLGTMVS...........................
  903-  957 (82.22/54.72)	ATGVDVPRLPADG..ISAATLPLPLAALVSLTITYKLEKATERFLVLvgpALDSLAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.59|      30|      92|    1118|    1148|       2
---------------------------------------------------------------------------
 1118- 1148 (47.64/28.69)	SLGAS.LVWISGGLNLVQALIKETlPSWFISV
 1211- 1241 (51.95/27.62)	SLGCDwATWQAYVTGFVSLMVQCT.PAWVLEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.28|      15|      47|     313|     328|       4
---------------------------------------------------------------------------
  313-  328 (23.36/15.02)	ALTSQYHGTSeSALWL
  362-  376 (28.92/14.68)	AISTTWHDAF.LALWL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.98|      37|     126|     602|     644|       8
---------------------------------------------------------------------------
  602-  640 (61.60/49.30)	FlnVLLVGISPVDCVQI.FSLHGVVPLLAGA......LMPIC..EAFG
  666-  711 (57.37/30.03)	F..TLLLRLWRFDHPPLdYVLGDVPPVGPQPspeyllLVRNCrlECFG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33138 with Med33 domain of Kingdom Viridiplantae
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