<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33137

Description Uncharacterized protein
SequenceMNQQQPEVSLGNSGGGNIEAPATEEGEEEEVEQQQQQLEESESRDPIVVEEKSLEKSTENIEKEDHQMEVDLVSPATVFCVKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANPPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPTQGSANLVHDATSWQCEHEWRQDIAVVTKWLAGASPYRWLSSKPSSGTNSKSTFEEKFLSQSSESSARWPNFLCVCSVFSSGSVQLHWSQWPSNQGGTAPKWFSTKKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFAPLAAYLFNWQEYLISEIKQGKKPTDQESSDAISLSCSPVSNFSAYVSPEAASQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQAAAAGPSVDGQKEPESGDEKTNKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAIAAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRADGETISGINPEAMAVDPALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNITSPAQNASSPAPTQGQPTTTTTTTTTATTTNSSGSTQMQAWMQGAIAKISSSNDGVSNTTASPISGSATFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCYFQRSQPSRNPQRNADISSQKLQTGATSKLEEVNSAKPTPALNRIEEGQGFRTSQLGAGVKGIDENSARTTKMGSGNAGQGYTFEEVRVLFHILMDLCKRTSALGHPLPGSQVGSGNIQVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGSEPEDVVPSDDTFKQSHSLDLPDVYSRVQSLWPRKRRMSERDAAFGSNTSVGLGAYLGIMGSRRDVVTATWKTGLDGVWYKCIRCLRQTSAFASPGASKQPNPNERETWWTSRWVYCCPMCGGTWVRVV
Length1255
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.08
Grand average of hydropathy-0.280
Instability index49.64
Isoelectric point5.86
Molecular weight135938.22
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33137
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     201.53|      50|     249|     144|     195|       1
---------------------------------------------------------------------------
   97-  137 (67.73/33.75)	........PELCRNFSAVAWCGK..LNAIACASETCAR...IPSSKANPPFWIP
  138-  191 (80.54/46.23)	IHILipERPTECAVFNVVADSPRDSVQFIEWSPTSCPRAllIANFHGRITIWTQ
  587-  622 (53.27/24.52)	VHIF..SGPTFSPVENYQINVG.SAIAAPAFSPTSCCSA...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     279.93|      91|     423|     258|     449|       2
---------------------------------------------------------------------------
  329-  432 (132.54/200.10)	IVNPSTIVV..WEVTPGPGNGLqaTPKISTgsrVPPSLSSSSWtgfAPLAAYLfNWQEYLISEIKQGKKPTDQESSDAISLS.......CSPVSNFSayvSPeAASQSAATTT
  760-  859 (147.39/58.33)	LVNPSALVFepWRADGETISGI..NPEAMA...VDPALVSSIQ...AYVDAVL.DLASHFITRLRRYASFCRTLASHAASAGtgsnrniTSPAQNAS...SP.APTQGQPTTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.17|      38|     423|     258|     302|       4
---------------------------------------------------------------------------
  212-  249 (66.34/34.05)	WRQDIAVVTKWLAGASPYRWLSSKPSSGTNSKSTFEEK
  261-  298 (73.83/41.46)	WPNFLCVCSVFSSGSVQLHWSQWPSNQGGTAPKWFSTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.03|      41|     448|     433|     476|       5
---------------------------------------------------------------------------
  434-  474 (72.29/52.58)	GSGVTAVAFDPTRGGSVIAVVIVE...GQYMSPYDPDEGPSITG
 1058- 1101 (69.75/36.86)	GSGNIQVRLHYIDGNYTVLPEVVEaalGPHMQNMPRPRGADAAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.81|      24|     695|     302|     326|       6
---------------------------------------------------------------------------
  302-  326 (39.62/27.30)	LGAGPSGIMAADAIITDSGAMHvAG
 1000- 1023 (43.19/25.51)	LGAGVKGIDENSARTTKMGSGN.AG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.23|      47|     589|     519|     566|       7
---------------------------------------------------------------------------
  519-  566 (76.97/44.91)	PPTKDFkNHQAAAAGPSVDGQKEPESGDEKTNKVVFDPFDLPSDIRTL
 1111- 1157 (84.26/45.73)	PPSEEW.HRRNLFGGPGSEPEDVVPSDDTFKQSHSLDLPDVYSRVQSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33137 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGTGSNRNITSPAQNASSPAPTQGQPTTTTTTTTTATTTNSSGSTQ
2) KDFKNHQAAAAGPSVDGQKEPESGDEKTNKV
3) MNQQQPEVSLGNSGGGNIEAPATEEGEEEEVEQQQQQLEESESRDPIVVEEKSLEKSTENIEKEDHQM
4) RNPQRNADISSQKLQTGATSKLEEVNSAKPTPALNRIEEG
831
522
1
953
876
552
68
992










Molecular Recognition Features






MoRF SequenceStartStop




1) IEAPATEEGEEEEVEQQQQQL
18
38