<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33135

Description Uncharacterized protein
SequenceMINSNQIRSHLPEVQKPKGPQTNWSEHAKALESTSFLSSNFLYDLESQKPRRDRDMAARAIAFPNVNVHTLAHPQIAKAWRALSSLSVNNSYLRPGITPPVDDGATNGSYSAKERSTVKVTCSTDGSFYPNSRQNQSHMSVSGTGRHFHSSSAPGEEKFVAEKFARVNGEVRESETSSTHLNGLENPFRNSAFPDEQLESGEAFLDDDDILMNIDLDQIAMEHYQSTSTQPSVSNFPLRNPPVDRSASRREEECLPPELCFNCSHGIKLGLCPEASTHLEQMKNVLIAVSNELLDDDTDLSPDRAKQLRQERLQLKKQIQQLENHIRDKERQKPQSLSSAPTPGFQFETPKSTNRKMDLPQTEFQAHLSEQGRYACDSWNMPRDSSFSVDRYGLSSAPVEREQYVPRIIDVTYTEGSNDKKWSSSDFPWTRKLEVSNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICKGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELSSEHSKYKLLYVTPEKVAKSDSLLRHLESLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAEKLQDFGHKAAFYHGSIEPAQRALVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMASGYNRVASSGRILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKFDSTNCKKTCDNCCSSQSLIDKDVTLITKQLVELVKQTGERFSSSHILEVYRGSLNQMVKKHRHETLQLHGAGKHLSKIEVSRIMHYLVTEDILVEDVRKSDMYGTVSSLLKVNHSKAASLFSGSQTIMMRFPSSGKVLKPSKPAATPAKGPITSAADAPPEDLNLSVRMYTALRKLRTLLVKEAPDGVMAYHIFGNATLQQMSKKIPRTKEELLEISGLGKAKVSKYGDRLLETIESTVSEYYGTNKKDSVINNDSPDSGKRRRDENISPNVAGDDDFAESSTQACKKAVRNKSNEARRGENVDGYGVGMVMDKLDFDFEDEDGSEIRPEGRVLPW
Length1174
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.07
Grand average of hydropathy-0.545
Instability index49.92
Isoelectric point7.05
Molecular weight131601.14
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33135
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     563.46|     143|     144|     769|     911|       1
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  671-  817 (190.61/140.19)	YCLSRMDCEKV.......aeKLQDFGHK..AAFYH....GSIEP..AQRALVQKqwskdeiNIICATVAFGMGINKPDVRF.......VIHHSLPKSIEG...YHQECGR...AGR...........dgqrsscvlyYGYGDYIRVKHMISQGGVDQSPMASGYN...RVASSGRILETNTENLLRMVS
  818-  960 (205.64/151.96)	YCENEVDCRRF......L..QLVHFGEKFDSTNCK....KTCDNCCSSQSLIDK.......DVTLITKQLVELVKQTGERFSSSHILEVYRGSLNQMVKK...HRHETLQLHGAGK.........hlskievsrimhYLVTEDILVED......VRKSDM...YG...TVSS...LLKVNHSKAASLFS
  961- 1129 (167.22/121.89)	GSQTIM..MRFpssgkvL..K....PSKPAATPAKgpitSAADAPPEDLNLSVR.......MYTALRKLRTLLVKEAPDGVMAYHIFG..NATLQQMSKKiprTKEELLEISGLGKakvskygdrlletiestvseyYGTN...KKDSVINNDSPDSGKRRRDENispNVAGDDDFAESSTQACKKAVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     357.94|     123|     140|      76|     215|       2
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   48-  200 (179.69/138.50)	QKPRRDRDMAARAIAfpnvnvhtlahpqIA.KAWRALSS.LSVNNSYLRpgiTPPVDDGAtngSYSAKE..RSTVKVTCStDG...SFYPNSRQNQSHM.....SVSGTGRHFHSSSAPGEEKFVAEKFARVNGEVREsetssthlngLENPFRNSAFPDEQ.LES
  201-  339 (178.25/103.76)	GEAFLDDDDILMNID..........ldqIAmEHYQSTSTqPSVSNFPLR...NPPVDRSA...SRREEEclPPELCFNCS.HGiklGLCPEASTHLEQMknvliAVSNELLDDDTDLSPDRAKQLRQERLQLKKQIQQ..........LENHIRDKERQKPQsLSS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33135 with Med34 domain of Kingdom Viridiplantae
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