<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33133

Description Uncharacterized protein
SequenceMSSEVKQLIVVAEGTAALGPYWHTIVSDYLEKIIRSFCGSELNGERNVELSLVIFNSHGSYCACLVQRSGWTKDVDIFLHWLSSIQFAGGGFSEAATAEGLAEALMMFSPPSGQAQPSNDLKRHCILITASNPHSLPTPVYRPKLPNAERNENGDAQSESRLSDAETVASYFSRCSVSLSVICPKQLPKIRALYNAGKLNPQSPDLSIDTVKNTFYLVLIPENFVEARAALSHSATNLPQTQSPVKVDRSTVAPSLPVTGQPPAPVPSANGPILNRQPVSIGPVPTATVKVEPSTVPSMAAVSTFPHIQSVARPATQAIPSIQTSSPSPVSQEMVTNAENAPDVKPVVTGMTPPLRTGPPGGANVNLLNNLSQVRQVMSSAALAGAASSTGQSAVAMHMSNMISTGMATSLPPSQTVFSSGQQGITSMAGSGALMGTVQAGQSPGPNNSFSPQTTSNVASNLGVSQPMPGMNQGSHSGAQMMQGGIPMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSAPNMQLSQPSSAALQTSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASASDSLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLVSLVDIL
Length643
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.05
Grand average of hydropathy-0.168
Instability index52.80
Isoelectric point8.45
Molecular weight67426.59
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33133
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     313.79|      48|      48|     423|     470|       1
---------------------------------------------------------------------------
  288-  321 (29.32/ 6.85)	..............TVKV.EPSTVPSmaavSTF.PHIQS..VAR..PATQAIPS
  332-  373 (49.93/16.42)	QEMVTNAENAPDVKPVVT.GMTP.PL....RTGPPGGANvNLLNNL..SQ....
  375-  419 (51.06/16.94)	...RQVMSSAALAGAASStGQS.AVA....MHMSNMIST.GMATSLPPSQTVFS
  423-  470 (86.22/33.28)	QGITSMAGSGALMGTVQA.GQSPGPN....NSFSPQTTS.NVASNLGVSQPMPG
  473-  513 (68.04/24.83)	QG....SHSGAQM..MQG.G.IPMNQ....NMMSGLGQG.NVSSGTGGMMPTPG
  520-  540 (29.22/ 6.80)	SGIQQLGGS.....................NSSAP.........NMQLSQP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     129.46|      31|      39|     181|     211|       2
---------------------------------------------------------------------------
  140-  166 (34.67/16.50)	..............VYRPK.LPNAER.N.EN.GDAQ..S..ESRLSDAE
  167-  209 (45.98/24.28)	TVasyfsrcsvslsVICPKQLPKIRA.L.YNAGKLN..P..QSPDLSID
  210-  248 (25.35/10.10)	TV......kntfylVLIPENFVEARAaLsHSATNL...PqtQSP.VKVD
  251-  280 (23.46/ 8.79)	TV.........apsLPVTGQPPAPVP.S.ANGPILNrqP..VS......
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33133 with Med25 domain of Kingdom Viridiplantae
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