<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33132

Description Uncharacterized protein
SequenceMSRSPENIALPPPPPPPPPLPLPSSHTVVVALSGSRKNKNVVTWALEKFAPEGNVGFKLLHIHPRITSVPTPMGNAIPISEVRDDVVTAYRQEILWQSEEVLKPLKKMFERRKVAVEVLVLESDNVAAAIAEEVTRNSIERLVIGGSSRSFFSRRADMCSAISALMPNFCTVYVVSKGKLSCVQPSNSDGNATIRDDGSDRTDSSSGSSGPTSESTDGISSAYDSQSRALSLPVRRLHHFPTITRQASVPMETSSVGSDETRCMSLDAEEAKDVSSINRSSTDTTLRWTPRVRDYDERKDAMSSSSSNREYGNVGSRFSWTGMVIDTNHSRASQQASNMSDALSEQSYTDNQVNLSFEVEKLRAELRHVQEMYAVAQTETYDASRKLSELNQRRLEEAIKLEELKLKEYEARELAEKEKQNFEQARRDAESMRERAEREIAQRREAERKAARDAKEKEKLEGTLGSPQLQYQHFTWEEIVAATSSFSDELKIGSGSFGAVYKCNLHHTTAAVKVLHSAENGLSKQFKQELEILSKIRHPHLVLLLGACPEQGALVYEYMENGSLEDRLFQVNNSPPLPWFERVRIAWEVAAALVFLHKSKPKPIIHRDLKPANILLDHNFVSKVGDVGLSTMVQVDSLSTKFTIYKQTSPVGTLCYIDPEYQRTGMISSKSDVYSFGMILLQLLTGKPAIALTHYVERAMDSNDEFLKILDQKAGNWPVEETRELTALALCCTELRGKDRPDLKDQILPALESLKKVAEKARNSVSGVPTQPPTHFLCPLLKDVMNEPCVAADGYTYDRRAIEEWLEEHDTSPMTNLPLHNKNLLPNYTLYTAIMEWRSRF
Length841
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.07
Grand average of hydropathy-0.493
Instability index51.00
Isoelectric point6.07
Molecular weight94293.54
Publications
PubMed=23518688

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33132
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.22|      26|      29|     269|     296|       1
---------------------------------------------------------------------------
  269-  294 (45.29/32.82)	EEAKDVSSINR..SSTDTTLRWTPRVRD
  299-  326 (41.93/22.50)	KDAMSSSSSNReyGNVGSRFSWTGMVID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.96|      14|     176|      60|      73|       2
---------------------------------------------------------------------------
   60-   73 (28.39/18.39)	LHIHPRIT.SVPTPM
  237-  251 (23.57/14.07)	LHHFPTITrQASVPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.33|      25|      25|     406|     430|       3
---------------------------------------------------------------------------
  385-  411 (30.46/17.90)	RKLSELNQRRLEEAIKLEElkLKEYEA
  412-  437 (34.60/21.31)	RELAEKEKQNFEQARRDAE.sMRERAE
  438-  458 (25.28/13.64)	REIAQRREAE.RKAARDAK..EKE...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.19|      24|     474|      95|     120|       6
---------------------------------------------------------------------------
   95-  120 (34.20/32.10)	LWQSEEVlKPLkKMFERRKVAVEV...LV
  568-  594 (42.00/28.55)	LFQVNNS.PPL.PWFERVRIAWEVaaaLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.83|      13|      31|     220|     232|       7
---------------------------------------------------------------------------
  220-  232 (21.43/15.09)	SSAYDSQSRALSL
  254-  266 (23.40/17.25)	SSVGSDETRCMSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33132 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEKEKQNFEQARRDAESMRERAEREIAQRREAERKAARDAKEKEKLEG
2) PSNSDGNATIRDDGSDRTDSSSGSSGPTSESTDGISSAYDS
3) PTITRQASVPMETSSVGSDETRCMSLDAEEAKDVSSINRSSTDTTLRWTPRVRDYDERKDAMSSSSSN
415
185
241
462
225
308










Molecular Recognition Features






MoRF SequenceStartStop




NANANA