<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33131

Description Uncharacterized protein
SequenceMEGGVGLTTTQPQGQPPPVAEKLNQKVVQLLNLESVKTRAVSLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVEAVNEVSQAFVVLPKNVNAENAAILPVMLSSKLLPEMETDDNSKREQLLQGVQNLPIPMQIERLRARIDMIEAACKNAEGVLGETRKAYGFGTRQGPSMLPTMDKGQAAKIQEQENMLRAAINDGAGTRLPPDQRRITTALPPHLADVLIVNDAGKNAFHVASNNINSQGNMMQVSGTQFMGRSAASPSGANFDNTRSPLPYSNSPQSTGMVNAPSPQQHQLQQQQRSKLMQLPQHQQQLLAQQQQQLRQSSMQGLGQGQISSLQDLHGQTQQKFQTLHGQHQMPYSQPMGHQQFQARQLSGGHIQHSMSQGQLNPAMNRHLNQFSGGANSNMFTSAQGSPSSQMIPNMSSIQSQTLVPRMQQYGVSGTNPQRSHASQMLGDQMYNSSGMMQTQSQQPQQQQQQQGIYGGNMQTNQQTLQPNMLQNAQQRHQNPQ
Length519
PositionHead
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.04
Grand average of hydropathy-0.710
Instability index58.90
Isoelectric point9.36
Molecular weight57256.75
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33131
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.75|      17|      18|     295|     311|       1
---------------------------------------------------------------------------
  295-  311 (31.65/ 9.83)	MVNAPSPQQHQLQQQQR
  314-  330 (27.41/ 7.55)	LMQLPQHQQQLLAQQQQ
  474-  489 (30.69/ 9.31)	MMQTQS.QQPQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.12|      22|      22|     338|     359|       2
---------------------------------------------------------------------------
  334-  355 (37.50/15.01)	QSSM...QGL.GQGQ.ISSLQDL.HGQT
  356-  379 (31.35/11.32)	QQKF...QTLhGQHQ.MPYSQPMgHQQF
  415-  440 (24.27/ 7.06)	SNMFtsaQGS.PSSQmIPNMSSI.QSQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.47|      18|     115|     390|     407|       3
---------------------------------------------------------------------------
  390-  407 (33.31/14.45)	QHSMSQGQLNPAMNRHLN
  500-  517 (32.16/13.70)	QQTLQPNMLQNAQQRHQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.44|      31|      44|     134|     164|       5
---------------------------------------------------------------------------
  134-  164 (53.96/30.96)	QGVQNLPI..PMQIERLRARIDMIEAACKNAEG
  179-  211 (48.49/27.14)	QGPSMLPTmdKGQAAKIQEQENMLRAAINDGAG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33131 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FHVASNNINSQGNMMQVSGTQFMGRSAASPSGANFDNTRSPLPYSNSPQSTGMVNAPSPQQHQLQQQQRSKLMQLPQHQQQLLAQQQQQLRQSSMQGLGQGQISSLQDLHGQTQQKFQTLHGQHQMPYSQPMGHQQFQARQLSGGHIQHSMSQGQLNPAMNRHLNQFSGGANSNMFTSAQGSPSSQMIPNMSSIQSQTLVPRMQQYGVSGTNPQRSHASQMLGDQMYNSSGMMQTQSQQPQQQQQQQGIYGGNMQTNQQTLQPNMLQNAQQRHQNPQ
2) GTRQGPSMLPTMDKGQAAKIQEQENMLRAAINDGAGTRLPPDQRRITTALPPHLA
243
176
519
230










Molecular Recognition Features






MoRF SequenceStartStop




NANANA