<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33128

Description Uncharacterized protein
SequenceMVVTREDKFAGSYLGVKPMIGPYKLRQNCGSYLPEVENSRGHFPQTNWSEHAKAFECIPSVNKSLSSNLLYSLESQKHRRSRDSASRPIENVIPVNMQNLTRQQIEKAWCALTNLSINHTYLRPGITPAVDDSSTNCTSSMRGRSTVKVTSNADGSFYAHNHPEQSQESVRGTARSFDRFSSSFPGDGKLTAGKVPRVNNEVRDSVTGCKYINGMDIQPIRNFALPARQVEASLIEIDDDDILEIIDVDQIVMENYHLTYTPQPSVNIFASRGEEVPCLPPELCSNCSHGVKLGLCLEASTHVEQMKDALLAISNKLLDDSTDLSRDHSEQLCQERLLLKNQIQQLEILIQNKERKKSSTPTHNFQYGTPQITNCKVDYAQTDSREEQGRYVSDNWNMPRDYLLSEDRYGLSSGPVERERHVPEIIDVTYTDGSNDTKWCSRDFPWTKNLEINNKRVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALICAGITLVISPLVSLIQDQIMNLLQTNIPAASLSAGMEWGEQQEILRELSSGNSKYKFLYVTPEKVAKSDSLLRHLESLNSHSLLARFVIDEAHCVSQWGHDFRPDYQGLGVLKKKFPNIPMLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTNKCLEDIDKFIRENHFDESGIIYCLSRMDCEKVTEALQKFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQSSSCVLYYSYSDYIRVKHMISQGGPGQGPTTMGYNRLASAGRILETNTENLLRMVSYCENEVDCRRFLQLVHLGETFDSTNCKKTCDNCSSSRSLIDKDVTLIARQLVALVKLTGERFSSAHIIEIYRGSLNQTVKKHRHETLHLHGAGKHLAKSEASRILHYLVTKDILAEYVKKSYLYGSVSSLLKVNRSKADAILSGGQTIIMRFPSAVKVSKTSKSGAIPAKAPLKQTTFTPLMTHAPSQDSILSVTLYTALKKLRTDIVKESSDAVMAHHIFGNGTLRQISKRLPRTKEELLDITGLGKAKVNKHGDRLLEIIESTINEHYRTEKSEGPGSGKRRRNENISPNVADDDDPDWTPTHSHKKAVKNK
Length1148
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.07
Grand average of hydropathy-0.466
Instability index46.01
Isoelectric point8.56
Molecular weight128697.59
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33128
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     215.07|      70|     152|     888|     960|       1
---------------------------------------------------------------------------
  888-  960 (107.50/83.41)	LVKLTGERFSSAHIIEiyRGSLNQTVK...KHRHETLHLHGAGKHLAKSEASRILHyLVTKDILAEY.VKKSYLYGS
 1041- 1114 (107.57/71.66)	IVKESSDAVMAHHIFG..NGTLRQISKrlpRTKEELLDITGLGKAKVNKHGDRLLE.IIESTINEHYrTEKSEGPGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.20|      14|     165|     668|     683|       2
---------------------------------------------------------------------------
  668-  681 (25.81/21.68)	CLEDIDKFIRENHF
  698-  711 (23.39/10.84)	VTEALQKFGHKAAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.81|      38|     374|       5|      45|       3
---------------------------------------------------------------------------
    5-   45 (62.42/47.22)	REDKfaGSYLGVK.PMIGPYKLRQN.CGSYLPEVENSRgHFPQ
  385-  424 (58.39/33.94)	REEQ..GRYVSDNwNMPRDYLLSEDrYGLSSGPVERER.HVPE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33128 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IESTINEHYRTEKSEGPGSGKRRRNENISPNVADDDDPDWTPTHSHKKAVKNK
1096
1148










Molecular Recognition Features






MoRF SequenceStartStop




1) SGKRRRNENISPNVADDDDPDWTPTHSHKKAVKNK
1114
1148