<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33125

Description Uncharacterized protein
SequenceMVVMLTQKGREMSGGGGPTAEEGELFVAVAVKGIIGDKLGGAGSRRAVRWAVDNLLPKAHRFVMIHVIPTISTIPTPTGERLPVEEVEERLVEMYVRDVKQEFETVFVPFLKMCKSAPCTSPNAAATARGFLKDGAASFHNVQSKTLSDPRQSIEAGTRRSASAKELRLEVFGLAHSDPETPQSSKDSSATVPEIVRRRGGSDIPQLNYSDFDQTNEHQTNHENIVREQRDSDSPPATSRKSKKVEIEAEVERLKKELQSTVVKYKQACEELFSTQNKVQVLSSECSKDARRVNNAVEKGELQRKTAALEKERYKKAVKEVEAAKALLAREFCQRQIAEVNALRTYLEKKKVIDQLLGTDHRYRKYTIEEIVTATEGFSPEKVIGEGGYGKVYRCSIDSTPAAVKVVRLDTPEKKQEFLKEVEVLSQLRHPHVVLLLGACPENGCLVYEYLENGSLEEYIFHRKNKPPLPWFIRFRVIFEVACGLAFLHSSKPEPIVHRDLKPGNILLNRNYVSKIADVGLAKLVTDVAPDNVTMYRHSVLAGTLHYIDPEYHRTGTIRPKSDLYAFGITILQLLTARQPSGLVHAVENAVKRGTLTEMLDKSVTDWPLAETEELARIGLKCAEFRCRDRPDLKAEVIPVLKRLVETANSKIKKERSNLRAPSHYFCPILRVRKSLPGLEIMEEPEVAADGFTYEKKAILAWLEKHNISPVTRQKLDHFKLTPNHTLRSAIRDWKSRVRFSNAVVNIKD
Length749
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-0.430
Instability index47.77
Isoelectric point9.08
Molecular weight84280.75
Publications
PubMed=23518688

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33125
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.78|      24|      28|     178|     205|       1
---------------------------------------------------------------------------
  182-  205 (42.84/32.93)	PQSSKDSS...ATVPE.IVRRRGGSDIP
  208-  235 (34.95/16.16)	NYSDFDQTnehQTNHEnIVREQRDSDSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.79|      21|     313|     362|     382|       2
---------------------------------------------------------------------------
  362-  382 (37.97/26.51)	RYRK.....YTIEEIVTATEGFSPEK
  671-  696 (31.83/20.99)	RVRKslpglEIMEEPEVAADGFTYEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.82|      26|      28|     282|     307|       3
---------------------------------------------------------------------------
  282-  307 (42.66/28.01)	LSSECSKDA.RRVNNA...VEKGELQRKTA
  309-  338 (33.16/20.18)	LEKERYKKAvKEVEAAkalLAREFCQRQIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.23|      33|      35|     455|     488|       4
---------------------------------------------------------------------------
  455-  488 (58.06/45.68)	SLEEYIFHRKNKPPLPWFIRfRVIFEVA.CGLAFL
  491-  524 (53.17/36.16)	SKPEPIVHRDLKPGNILLNR.NYVSKIAdVGLAKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.29|      30|     397|     140|     174|       6
---------------------------------------------------------------------------
  140-  174 (43.51/42.96)	HNVQSKTLS..DPRQSiEAGTRRSASakelRLEVFGL
  538-  569 (51.78/35.06)	HSVLAGTLHyiDPEYH.RTGTIRPKS....DLYAFGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.71|      36|     168|     236|     271|       7
---------------------------------------------------------------------------
  236-  271 (58.89/42.77)	PATSR......KSKKVEIEAEVERLKKELQSTVVKYKQACEE
  401-  442 (55.82/40.13)	PAAVKvvrldtPEKKQEFLKEVEVLSQLRHPHVVLLLGACPE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33125 with Med32 domain of Kingdom Viridiplantae
Unable to open file!