<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33124

Description Uncharacterized protein
SequenceMVVPGRRTVWDGVIELTKMSQEQSVDARHWASHLSASLKSVVDFPSTELAEVLVSYICWDNNVPVLWKFLERAMALKLVSPLVVLALLADRVVPNRSTQIAAYRIYLELLKRNIFRIKDHITGPHYENVMKSVANILRLPELFGLETSKPGVLLVEFVFKTVSQLLDACLSDEGLLELSQDMETNAPERYNEKTGSHEKLQTLNTIMAIEMIAEFLRNTVTSSFLYLVSSNRASNWHEFVRRVQVLGEKSSALRNSKAITSGDLLQLISSRRFGYSSDSKVISLRKSNPIVDFGTLASFAGLCHGASLSSLWLPLDLVFEDAMDGYQVNPTSAIEIITGLVKTLKEINGSTWHDTFLGLWISALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVASLIEEGEHEFAMEKLRDDLITSLKVLGEFSGLLHPPNCVVSAANKAATKAIIFLSGGNVGKSSSDVINMKDMPNNCSGNMRHLIVEACIARNILDTSAYSWAGYVDGRINQIPHSLPSEVPCWSSFVKGAPLNAAMVKALVSVPASSLAELEKLYEVAVKGSDDEKISAATVLCGASLTRGWNIQEHTVEFLTRLLSPPVPADYSGAESHLIDYACMLNVVIVGIGSVDSIQIFSLHGMVPQLACSLMPICEEFGSYTPSVSWSLPSGENISAYSVFSNAFTLLLKLWRFNHPPIEHGVGDVPTVGSQLTPEHLLLVRNSHLVSSETLNRDRNRKRLSEVARSASCQPVFVDSFPKLKIWYRQHQRCIASTLSGLTHGSPVHQTVEALLHMIFRKFRGNQTLNPVNSGTSSSSGAASEDSILRPEVPAWDILKAVPYVVDAALTACTHGRLSPRELATGLKDLADFLPASLATIVSYFSSEVSRGVWKPAFMNGVDWPSPATNLSNVEEYIKKILATTGVDIPSLAPGGSSPATLPLPLAAFVSLTITYKIDKGSERFLNLAGPALECLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNPDAVVQLLRNCFSATLGLNAGPMSNDGGVGALLGHGFGSHFYGGISPVAPGILYLRMYRALRDTVSVTEEIFSILIHSVEDIAQNRLSKENLQRLKTVRNGSRYGQSSLATAMTQVKLAASLSASLVWLTGGIGVVHLLIKETIPSWFLSVDKSDREQPSDLVAELRGHALAYFVVLCGAFAWGVDSRSAASKRRQGILGSHLEFLASALDGKISVGCETATWRTYISGVVSLMVSCLPRWVREIDKEVLKSLSNGLRQWGKEDLAVLLLSMGGIETMDHTIDFIIHLRS
Length1295
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.08
Grand average of hydropathy0.125
Instability index43.29
Isoelectric point6.73
Molecular weight141690.67
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33124
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.47|      24|      47|     295|     318|       1
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  295-  318 (42.37/29.04)	TLASFAGLCHGASLSSLWL.PLDLV
  343-  367 (39.10/26.11)	TLKEINGSTWHDTFLGLWIsALRLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.51|      16|     155|    1100|    1115|       2
---------------------------------------------------------------------------
 1100- 1115 (28.58/16.21)	LKTVRNGSR.YGQSSLA
 1255- 1271 (24.92/13.21)	LKSLSNGLRqWGKEDLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.32|      37|      42|     898|     938|       5
---------------------------------------------------------------------------
  898-  937 (55.76/33.29)	ATNLSNVEEYIKKILATTGVDIPSLAPGGSSPAtlpLPLA
  942-  978 (63.56/31.82)	LTITYKIDKGSERFLNLAGPALECLAAGCPWPC...MPIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.21|      17|      38|     216|     232|       6
---------------------------------------------------------------------------
  216-  232 (30.61/20.01)	LRNT..VTS.SFLYLVSSNR
  253-  272 (20.61/10.88)	LRNSkaITSgDLLQLISSRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.87|      17|      44|     646|     663|       9
---------------------------------------------------------------------------
  646-  663 (29.87/27.42)	PICEEFGSyTPSVSWSL.P
  691-  708 (28.00/18.61)	PIEHGVGD.VPTVGSQLtP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     178.23|      60|      71|     709|     777|      10
---------------------------------------------------------------------------
  709-  777 (96.48/92.25)	EH.....LLlvrnsHLVssetLNRDRNRKRLSEV..ARSASCQPVFVDSF..PKLKIW..YRQHQRCIASTLSGLTHG..SP
  778-  850 (81.75/58.26)	VHqtveaLL.....HMI....FRKFRGNQTLNPVnsGTSSSSGAASEDSIlrPEVPAWdiLKAVPYVVDAALTACTHGrlSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     281.70|      91|     161|     989|    1095|      11
---------------------------------------------------------------------------
  989- 1095 (131.53/120.60)	WFdFLVFSASRtvflHNPDAVVQLLRN.........CFSATLGLNAGPMSNDGGVGALLGH..GFGSHFYGGISpVAPGILYLRMYraLRDTVSVteeIFSILIHSVEDIaqnrlSKE
 1152- 1253 (150.16/93.36)	WF.LSVDKSDR....EQPSDLVAELRGhalayfvvlCGAFAWGVDSRSAASKRRQGILGSHleFLASALDGKIS.VGCETATWRTY..ISGVVSL...MVSCLPRWVREI.....DKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.42|      33|     816|      34|      71|      12
---------------------------------------------------------------------------
   34-   68 (53.02/37.68)	LSASLKSVVDFPSTELAEVlVSYICWDNNVPVlWK
  853-  885 (56.40/31.22)	LATGLKDLADFLPASLATI.VSYFSSEVSRGV.WK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.28|      39|     161|     425|     466|      13
---------------------------------------------------------------------------
  425-  466 (62.55/45.08)	EF.SGLLHPPncvVSAANKAATKAII....FLSGGNVGKSSSDVINM
  587-  630 (58.73/34.06)	EFlTRLLSPP...VPADYSGAESHLIdyacMLNVVIVGIGSVDSIQI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33124 with Med33 domain of Kingdom Viridiplantae
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