<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33119

Description Uncharacterized protein
SequenceMANNPQYPGIQPFQHPNASSLDLPRGFAPSMNFQFRPTIQAPQSEQVARLSTQNFQCVGRGGPGGTTMNNGFPPQPYAPQLLQSMHHSLERPSQSNQVQHAPLGPPTRISQPNVPIASGTSLPQPYAQTPDISMSGFGGPRALFSYPSGTSYETLRAPTQVIGPNSHGQAQPRASISQTAALSSIMIPTFEQPKAALFQPIPSQVTVIDWVEHTSADGRRYFFNKRTKQSTWAKPVELMTLFERADARTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIAREQAEKASVQGLHAEGIIGASQVPSRSDTASPAAPTGLPSQTSSTLSTSDISEKLAPTSDWKQAASVSESSPPVENVDRVQTIADKTSQVCDTAKTADHSATLTITSAATLVEEDTVSVENSGGSDDMSAKNTNQGSGTGPEESQKHVVESERVDSQLEEKQIHQENFSYNNKSEAVDVFKYLLKSVNVGSDWTWEQAMREIINDRRYGVLRTLGERKQAFNEFLVQMKRAAEEEKVARQKKRYEDFRRMLEECLELTPSTRWSKAVTMLEDDERFKDVEREKDRRNIFEDHITDLKEKERVKALEDRKRNITEYRRFLESCNFIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEEQKKAERKHRDEFRGLIDEHIAKGELTAKTSWRDYLTKVRDLPVYSAIASNSSGATPKDLFEDAVEDLKRKYHDLKSQIKDVLKLRKVTIHAGSTFDEFKVSIPEGIGFPPIPDCKLKLVFDDLLERAKEKEEKEARKQTRHTEKLVDMLRSFKEITASSSWEESKHLVEGSEKFRTIGDESFRKQTFEDYVSHLKEQAKRIKQNKKVHENVKEEHDKGKDKHRREKDRVRERDSEDHHKRGAADSYNHDMNEPHGKERRRSGRDNHYRHRERHTSLKEDATDHYKESHKPVPGGGHKKSRQQVHFVESRERRVIFLFRF
Length978
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.07
Grand average of hydropathy-1.018
Instability index51.93
Isoelectric point8.33
Molecular weight112214.85
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33119
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     186.56|      43|      43|     193|     235|       1
---------------------------------------------------------------------------
  138-  186 (60.80/43.58)	GGP...ralfsyPSGTSYETLRAPTQVIGPNSHGQAQPRASISQTAALSSIM
  187-  232 (72.87/54.06)	IPT......feqPKAALFQPIPSQVTVIDWVEHTSADGRRYFFNKRTKQSTW
  233-  273 (52.89/36.71)	AKPvelmtlferADA........RT...DWKEHSSPDGRKYYYNKVTKQSTW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     458.75|      64|      65|     522|     585|       2
---------------------------------------------------------------------------
  439-  508 (71.66/45.31)	QL.EE.....K.QIHQ...........ENF...SYNnkseavD.VFKYLLKSV...NVGSDWTWEQAMREIINDRRYGVL.RTLGE...R...KQAFNEFLV
  509-  576 (90.09/59.11)	QM.K.........RAA....eeekvarQKK...RYE......D.FRRMLEECL...ELTPSTRWSKAVTMLEDDERFKDV.EREKD...R...RNIFEDHIT
  577-  643 (83.03/53.82)	DL.KE.....K.ERVK.......aledRKR...NIT......E.YRRFLESCN...FIKPNSQWRKVQDRLEVDERCSRL.EK.ID...Q...LEIFQEYLR
  644-  724 (56.50/33.97)	DLeRE.....E.EEKK.....kiqkeeQKKaerKHR......DeFRGLIDEHIakgELTAKTSWRDYLTKVRDLPVYSAI.ASNSSgatP...KDLFEDAVE
  725-  784 (42.73/23.66)	DL.KRkyhdlK.SQIKdvlklrkvtihAGS...TFD......E.FKVSIPEGI...GFPP...................I.PDCK....L...KLVFDDLLE
  785-  851 (81.40/52.60)	RA.KE.....K.EE.K.......earkQTR...HTE......K.LVDMLRSFK...EITASSSWEESKHLVEGSEKFRTI.GDESF...R...KQTFEDYVS
  852-  896 (33.34/16.63)	HL.KE.....QaKRIK..........qNKK...VHE......N.VK.........................EEHDKGKDKhRREKD...RvreRD.SEDH..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     153.87|      42|      48|      39|      85|       3
---------------------------------------------------------------------------
   10-   37 (39.82/17.05)	IQPF.QHPNA........SSLD......LPRGfAP.....SMNFQFRP............
   39-   84 (73.98/54.67)	IQAP.QSEQV........ARLSTQNFqcVGRG.GP..GGTTMNNGFPPQPYA..PQLlqS
   89-  133 (40.07/19.11)	LERPsQSNQVqhaplgppTRISQPNV........PiaSGTSL.....PQPYAqtPDI..S
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.35|      35|      37|     898|     932|       4
---------------------------------------------------------------------------
  898-  932 (65.56/33.59)	KRGAADSYNHDMNEPHGKERRRSGRDNHY.RHRERH
  936-  971 (58.78/29.41)	KEDATDHYKESHKPVPGGGHKKSRQQVHFvESRERR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     158.26|      42|      47|     327|     371|       5
---------------------------------------------------------------------------
  305-  323 (32.59/15.82)	VPSRSDTASPAAPTG............LP...............SQ
  327-  371 (65.48/48.01)	TLSTSDISEKLAPTSdwkQAASVSESSPPVENVDRVQTIADK.TSQ
  375-  417 (60.19/35.36)	TAKTADHSATLTITS...AATLVEEDTVSVENSGGSDDMSAKnTNQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33119 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MANNPQYPGIQPFQHPNASSLDLPRGFAPSMNFQFRPTIQAPQSEQVARLSTQNFQCVGRGGPGGTTMNNGFPPQPYAPQLLQSMHHSLERPSQSNQVQHAPLGPPTRISQPNVPIASGTSLPQPYAQTPDISM
2) SHLKEQAKRIKQNKKVHENVKEEHDKGKDKHRREKDRVRERDSEDHHKRGAADSYNHDMNEPHGKERRRSGRDNHYRHRERHTSLKEDATDHYKESHKPVPGGGHKKSRQQVHFVE
3) SVQGLHAEGIIGASQVPSRSDTASPAAPTGLPSQTSSTLSTSDISEKLAPTSDWKQAASVSESSPPVENVDRVQTIADKTSQVCDTAKTADH
4) TLTITSAATLVEEDTVSVENSGGSDDMSAKNTNQGSGTGPEESQKHVVESERVDSQLEEKQIHQEN
1
851
290
384
134
966
381
449










Molecular Recognition Features






MoRF SequenceStartStop




1) VIFLFRF
972
978