<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33116

Description Uncharacterized protein
SequenceMLPNPPFGRPGTLAPPGLMTSPPAFPGSNPFSTTPRPGMSAGPAHINPGIHSHMYPPYHSHPTMHGTPQGMWLQPPHMGGIPRAPFHSHPTPFPGSYPFSVRGISPHLPYSGPQPLGGVPIGSAGSVQALPGHQLDISPRQKTEALSGIDDRAGSQLVGNRVEAWTAHKSETGIVYYYNSVTGQSTYEKPPGFEGEPDKVPVQPIPVSMENLHGTDWALVSTNDGKMYYYNNKTKVSSWQIPAEVRDLAKKTEEMSTESLAPLSSADLTEKDSDQSTLNAPAISNGGRDATSLRTTNFPGSSTLDLVKKKLHDSGLPVSSMTTSEANGGKAIEVTPSGESGNGMGKVKDAPEAGDLSDSSSDSEDDDSGPSKEECIKQFKEMLKERGIAPFSKWEKELPKIIFDPRFKAIPSHSVRRSLFEQYVKTRAEEERREKRAAHKAAVEGFKQLLDEASKDIDQHTDYHGFKRKWGNDLRFEALERKEREALLKERVLHFKRTAEQKSQEIRTAAASDFKTMLRERGVSINSHWSKVKDSLRNDPRYRSAVHEDREVFFNEYIAEVKAAQRGDDHETKARDEEDKLRERERELRKRKEREVQEVERVRQKIRRKEAVSSYQALLVEKIRDPEASWTESKPKLERDPQKRASNPDLDSADKEKLFRDHIKTLYERCAHDFKALLVEVLSSEAASQQTEEAKTVLNSWSTAKQLLKPDIRYSKMPRNDREVLWRRYAEDILRKQKQESHQKEEKQRDYKT
Length753
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.07
Grand average of hydropathy-0.955
Instability index48.13
Isoelectric point8.51
Molecular weight84894.00
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33116
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.79|      24|      27|      43|      68|       1
---------------------------------------------------------------------------
   51-   81 (45.98/28.53)	HSHMyP..PYHSHPTMHGTP....qgmwlqPPH...MG.........GI
   82-  104 (23.01/ 7.67)	.....PraPFHSHPT..PFP.......gsyPFS...VR.........GI
  105-  149 (23.80/10.97)	SPHL....PYSGPQPLGGVPigsagsvqalPGHqldISprqktealsGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.99|      15|      16|     583|     597|       2
---------------------------------------------------------------------------
  490-  504 (22.38/13.45)	ERVLHFKRTAEQKSQ
  583-  597 (24.61/15.56)	ERERELRKRKEREVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.79|      15|      17|     247|     262|       3
---------------------------------------------------------------------------
  247-  262 (21.45/17.86)	DLAKKTEEMSTESlAP
  267-  281 (26.34/16.91)	DLTEKDSDQSTLN.AP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.37|      26|      51|     165|     190|       4
---------------------------------------------------------------------------
  165-  190 (49.15/33.81)	WTAHKSETGIVYYYNSVTGQSTYEKP
  217-  242 (50.22/34.70)	WALVSTNDGKMYYYNNKTKVSSWQIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     338.13|      64|      66|     404|     467|       5
---------------------------------------------------------------------------
  362-  424 (73.87/39.67)	....D......................................SEDDDSGPSKEECIKQFKEMLKE....RGIAPFS........KWE...kelpkiifDPRFKAI.P..SHSVRRSLFEQYV
  425-  489 (81.78/44.67)	KTRAE......................................EERREKRAAHKAAVEGFKQLLDE..ASKDIDQHT........DYHGFK...rkwgnDLRFEAL.E..RKE.REALLK...
  505-  558 (67.55/35.67)	...............................................EIRT...AAASDFKTMLRE..RGVSINSH..........WSKVK...dslrnDPRYRS..A..VHEDREVFFNEYI
  559-  663 (49.52/24.27)	...AEvkaaqrgddhetkardeedklrererelrkrkerevqeVERVRQKIRRKEAVSSYQALLVE..KIR..DPEA........SWTESK...pklerDPQKRASnPdlDSADKEKLFRDHI
  664-  729 (65.43/34.33)	KTLYE............................................RCAH.....DFKALLVEvlSSEAASQQTeeaktvlnSWSTAK...qllkpDIRYSKM.P..R.NDREVLWRRY.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.75|      17|      19|      10|      27|       6
---------------------------------------------------------------------------
   10-   27 (32.53/17.79)	PGTLAP.PGlMTSPPAF..PG
   30-   49 (27.22/10.73)	PFSTTPrPG.MSAGPAHinPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.60|      10|      17|     293|     302|       7
---------------------------------------------------------------------------
  293-  302 (17.92/10.25)	LRTTNFPGSS
  311-  320 (16.68/ 9.02)	LHDSGLPVSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33116 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HLPYSGPQPLGGVPIGSAGSVQALPGHQLDISPRQKTEALSGIDDRAG
2) IPAEVRDLAKKTEEMSTESLAPLSSADLTEKDSDQSTLNAPAISNGGRDATSLRTTNFP
3) KKLHDSGLPVSSMTTSEANGGKAIEVTPSGESGNGMGKVKDAPEAGDLSDSSSDSEDDDSGPSKEECIKQF
4) MLPNPPFGRPGTLAPPGLMTSPPAFPGSNPFSTTPRPGMSAGPAHINPGIHSHMYPPYHSHPTMHGTPQGMWLQPPHMGGIPRAPFHSHPTP
107
241
309
1
154
299
379
92










Molecular Recognition Features






MoRF SequenceStartStop




1) LLKPDIRYS
2) LPKIIFDPRFKAI
3) VLWRRYAEDILRKQ
707
398
724
715
410
737