<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33114

Description Uncharacterized protein (Fragment)
SequenceVGVFYSSLGTIVYRKRHRFDRNIVAIASLVVTSDKIWMSKSLGNTLILSLDTTTSSIRLQQRLASPVTEVANNRHYLTSLSFFSSGHLFFDFLISSGLVTDMRPPLTGRGGGGGFRGGRDGGGGGFRGGRGGGGGRGGFGGGRGGSAMRGGGRGGGRGDRGRGGRGGDRGRGGRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGAYRVPKKQKAAAT
Length422
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.08
Grand average of hydropathy-0.231
Instability index36.42
Isoelectric point10.22
Molecular weight44929.72
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:InterPro

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33114
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     121.83|      19|      19|     127|     145|       1
---------------------------------------------------------------------------
  108-  125 (31.71/ 8.77)	..GRGGGGGfRGGRDGGGGG
  127-  145 (46.20/16.18)	RGGRGGGGG.RGGFGGGRGG
  162-  180 (43.92/15.01)	RGGRGGDRG.RGGRGGMKGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     184.33|      57|     161|     189|     248|       2
---------------------------------------------------------------------------
  189-  248 (86.77/68.64)	RHAGVFIAKGKEDALvtKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKlAAAILG
  353-  409 (97.57/66.29)	KTGGHFVISIKANCI..DSTVPAEAVFQSEVKKLQQEQFKPAEQVTLEPFERD.HACVVG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33114 with Med36 domain of Kingdom Viridiplantae
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