<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33109

Description Uncharacterized protein
SequenceMDYFFRKTSTDHKPVLDQLPVRTVSDLVSTSQSVTIAVAISGSNKSKNVVRWALKKFGSDKNVVFKLIHIHPKIMSLPTPTGNIVSISEAPEDVAATYRRQVMEETKETLLKPFRKMCERKKVPVQLQVLESNSVAVAITREVNQHLINRLVIGRSSHVGLYGNQDITAKISAYVSNLCTVYVVSKGVYILSKDRSTSDAEMNENIRESGSERTDSSSCSSGSGPMSDAMSNALKSKSLAQSSKRLQHLPTIVRGVSVRMESSSVDSDDTRSMSSDAAEEVSKRSSPETSRNVSWNPRFRDFDERKDGMSSLSGNVEYGNVTHQGDDYLTDDQDTLEEITKLRDELRHAQEMYAAAQVETLDASRKLNELKFEELTLKEQETKGLAEKETQKFEQKRRAAEKEAAQRREAEMKSTREAKEKEKLKESSLVAPKLQYQEFTWEEITTATSSFSEDLKIGIGAYGAVFKCNLHHTIAAVKVLHSAESNLSKQFDQELEILSKIRHPHLVLLLGACPEHGALVYEYMENGSLEDRLFQVNNSQPIPWFVRFRIAWEVASALVFLHKSKPTPIIHRDLKPANILLDHNFVSKVGDVGLSTMIQVDPLSTKFTMYKQTSPVGTLCYIDPEYQRTGMLSPKSDVYAFGMIILQLLTAQPAIALTYTVEIAMENNDDEELIQILDKKAGDWPIEETRQLAALALYCTELRAKDRPDLENQILPTLEILKKVADKARNSLSDSAKQPPSHFICPLLKDVMKEPCVAADGYTYDRRSIEEWMENHRTSPVTDLPLQNMNLLPNHTLYAAIVEWRRKNQ
Length809
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-0.472
Instability index49.24
Isoelectric point6.26
Molecular weight91154.49
Publications
PubMed=23518688

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33109
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.18|      15|     216|     195|     209|       1
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  195-  209 (25.49/18.20)	RSTSDAEMNENIRES
  413-  427 (23.69/16.33)	KSTREAKEKEKLKES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.62|      37|     138|     506|     544|       3
---------------------------------------------------------------------------
  506-  544 (60.09/44.02)	LVL.LLGACPEhGALVYEY...MENGSlEDRLFQVNNSQPIPW
  644-  684 (54.53/31.33)	IILqLLTAQPA.IALTYTVeiaMENND.DEELIQILDKKAGDW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     216.96|      76|     183|      22|     121|       4
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   22-  113 (99.51/102.06)	RTVSDLVStSQSVTIAVAISGSNKSKnvvrwALKKFGSdknvvfKLIHIhPKI...MSLPTPTGNIVS......ISEAPEDVAatyRRQVMEETKETLLKP
  213-  297 (117.46/72.37)	RTDSSSCS.SGSGPMSDAMSNALKSK.....SLAQSSK......RLQHL.PTIvrgVSVRMESSSVDSddtrsmSSDAAEEVS...KRSSPETSRNVSWNP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33109 with Med32 domain of Kingdom Viridiplantae
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