<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33108

Description Uncharacterized protein (Fragment)
SequenceGGGGGRGEGGAWRGRGSDRGRGPGGRRPGGRGPGGRGPGGRGPGGRDPRSKPGGRAKVGLNGGSKVIVEPHRHAGVFIVKGKEEALVTKNLVPGESVYNEKRISVENEDGTKVEYRVWNPFRSKLAAAIFGGIDNNWIKPGAKVLYLGAASGTSVSHVSDIVGPEGCVYAVEFSSRSGRDLVNMASKRTNVVPIIEDARHPSKYRMLVPMVDVIFSDVAQPDQARIMALNASFYLKTGGHFMISIKASCIDSTVAEEAVFANEVKKLQAEGFKPAEQLTLEPFERGHACVVGGYRMPKKQKAT
Length303
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.07
Grand average of hydropathy-0.434
Instability index32.50
Isoelectric point9.89
Molecular weight32162.23
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:InterPro

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33108
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.00|      16|      17|      20|      36|       1
---------------------------------------------------------------------------
   20-   36 (34.60/14.93)	GRGPGGRRPGGRgPGGR
   40-   55 (36.40/12.31)	GRGPGGRDPRSK.PGGR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33108 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGGGGRGEGGAWRGRGSDRGRGPGGRRPGGRGPGGRGPGGRGPGGRDPRSKPGGRAKVGLNGGSK
1
65










Molecular Recognition Features






MoRF SequenceStartStop




1) GGGGRGEGGAWRGRGSDRGRGPGGRRPGGRGPGGR
2
36