<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33106

Description Uncharacterized protein
SequenceMTNKFFESIGGAPAYSLVSVAVKGSVGGAVGGAASRRALRWAVENLLPKIDRLVLVHVMPTVTSIPSPSGSKIPVEELEESVVSMYKRDRRKEFEQVFVPFKKICKSNKVETLLLEHHDPAKALVNYISDSEVECLVIGSCSSNFLTRKKGQEMPLTVLGEAPEACEIYVVCKDRILTKSTNQLSADSSSSFRIPEGAEAYTESFSRTRSDKTGLSASSISSSGRKQIRRPASLPHSHPTSQVFSDAQSSTDIGLVNDEHIRSILRHSIVSSSKMQLNPGADKKTSKSHVKSEVEQLRKEVQTTLSMYKKACEELVHKQTQVQSLSSECIKETKRVITALEKEEMLRKAAAEEKEKHLKAVKEVEDAKSMLAKEFCERQLAELDALKQSIEKQKVIDQLFLRDGRYRKYTKEEISAATDNFSSRKIIGEGGYGKVYKCSLDHTPVALKVLKPDSIEKKEEFLREISVLSQLRHPHVVLLLGACPENGCLVYEYMENGSLDAHISPKKGKPSLSWFIRFRIIYETACGLAFLHNSKPEPIVHRDLKPGNILLDRNFVSKIGDVGLAKLMSEEAPDSVTVYRNSIIAGTLYYMDPEYQRTGTIRPKSDLYAFGIIILQLLTARHPNGLLFCVEDAVKRGSFGDMLDGSVRDWPVEEAKELARIAIKCSQLKCRDRPDLDTQVLPALKRILESANNRLRTEQANARPPAHYYCPILKEIMEDPQIAADGFTYEGKAIKAWFQKHQNVSPVTKHRLKHSDLTPNHTLKSAIQEWRSRSRIDLSTTLGSF
Length785
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-0.401
Instability index50.62
Isoelectric point8.96
Molecular weight87872.83
Publications
PubMed=23518688

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33106
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.49|      29|     221|     437|     515|       1
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  483-  515 (50.23/106.23)	CPengcLVYEYMENGSLDAHISPKKGKPSLSWF
  710-  738 (54.26/16.61)	CP....ILKEIMEDPQIAADGFTYEGKAIKAWF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     425.42|     150|     205|      91|     270|       2
---------------------------------------------------------------------------
   78-  264 (214.21/190.98)	LEESVVsmykrdrRKEFEQVFVPFKKIC.....KSNKVETLLlehhdpakalvnyisdseVECL.....VIGSCSSNFLTRK.............KGQEMPLTVLgeAPEACEIYVVCKDRiLTKST......NQLsadSSSSFRIPEGAEAYTeSFSRTRSDKTGLSASSISSSGRKQIRRPA.......SLPHSHPTSQVFSDAQSSTdiglvNDEHIRSI
  265-  297 (33.58/12.89)	LRHSIV.....................................................................................................................................SSSKMQLNPGADKKT.SKSHVKSEVEQL........................................................
  298-  465 (177.64/108.10)	.............RKEVQTTLSMYKKACeelvhKQTQVQSLS..................SECIketkrVITALEKEEMLRKaaaeekekhlkavKEVEDAKSML..AKEFCERQLAELDA.LKQSIekqkviDQL......FLR.DGRYRKYT.........KEEISAATDNFSSRKIIGEGGygkvykcSLDHTPVALKVLKPDSIEK.....KEEFLREI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33106 with Med32 domain of Kingdom Viridiplantae
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