<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33104

Description Uncharacterized protein
SequenceMTSMKPSASLDSWREYFRRGDSDIFGIIDHAIMVAAADCPNKFKSRRDKIAELLFSCRVSRCTGCDHLELSVPGDDEANRGRGTTGTGDGGDTAVDGDEDYEVGGSKESKANSSRGDNNHMDETNLNSNQIASNYTYDEAEALSDAIEEFTVISKEVGRIKEILLNKEDEPHSVILESLRKLKLMSLNVDILKSTEIGKAVNGLRKHASDKIRQLAKTLIAEWKELVDQWVSTTKEITGAEGTPESANPSVVDEEEAFPSLPYDVDIFTPQPDVFEMSNFFDSMDFDGNPRNSGEYNTNTSREHERRPLNIAKRRPEGTQTRIQDAPFRSIKPSSATDFDGTRRPLKQHTEQRMKNEIVSVHKSEKPMIHRKPLVTEHKRKAPGPQQERLKGLDPDAKFEFAKRKLQESYQQHENAKKQRTIQVLETIPKQGSAQKPQLKRPGMSNRNWANGRK
Length454
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-0.932
Instability index44.72
Isoelectric point6.32
Molecular weight51158.48
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33104
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.91|      32|      37|     300|     333|       1
---------------------------------------------------------------------------
  300-  331 (56.61/24.55)	TSREHERRPLNIAKRR..PEGTQTRIQ.........DAPFRSI
  337-  368 (28.60/10.64)	TDFDGTRRPLK........QHTEQRMKneivsvhksEKPM...
  371-  402 (28.69/10.64)	......RKPLVTEHKRkaPGPQQERLK.....gldpDAKFEFA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.59|      23|      37|     189|     212|       2
---------------------------------------------------------------------------
  189-  212 (34.05/27.96)	VDILKST..EIGKAvNGLRKHASDKI
  227-  251 (36.54/24.97)	VDQWVSTtkEITGA.EGTPESANPSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.95|      26|      30|      64|      93|       3
---------------------------------------------------------------------------
   64-   89 (47.05/31.27)	GCDHLELSVPGDDEANRGRGTTGTGD
   97-  122 (45.90/21.01)	GDEDYEVGGSKESKANSSRGDNNHMD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33104 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FDGNPRNSGEYNTNTSREHERRPLNIAKRRPEGTQTRIQDAPFRSIKPSSATDFDGTRRPLKQHTEQRMKNEIVSVHKSEKPMIHRKPLVTEHKRKAPGPQQERLKGLDPDAKFEFAKRKLQESYQQHENAKKQRTIQVLETIPKQGSAQKPQLKRPGMSNRNWANGRK
2) LSVPGDDEANRGRGTTGTGDGGDTAVDGDEDYEVGGSKESKANSSRGDNNHMDETNLNSNQI
286
70
454
131










Molecular Recognition Features






MoRF SequenceStartStop




1) AQKPQLKRPGMSNRNWANG
2) KGLDPDAKFEFAKRKL
3) WREYFRR
434
391
13
452
406
19