<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33100

Description Uncharacterized protein
SequenceMALVTPIPAMGERAGSMRFHGIGSPGSRSSRSGIMDEPVSRLIEEKIFVAVDKQVAKSKSTLIWALQNTGGKKICIIHVHQPSQMIPLMGAKFPVSSVKEEEVRVFREKEREKVHMILDEYLRICQQRGVRAEKMFIEMESIENGIVQLITELGIRKLVMGAAADRHHSRRMTELKSRKAIFVRREAPALCQIWFTCKGYLIHTREAAMYDTESEYASPRPSISASDLLQTFSTPESEHRHISRVHSTDSVQQLLSNESSSEHSERVSDGSLNTDEGEIEFDASGATGRATVMSSPSNLPDGVDDSFHDKIRQATSEAHSSKREAFAETLRRQKAENNALDAIRRAKQSESAYSEELKRRKDTEIAVSKEKERFVTIKKEQQVVMEELQSAMDQKAMLENQIAESDGTLEKLNQKLDIAVKLLQQLRDEREELQTERDRALREAEDLRSRAETSTLQLPQYFTDFSFSEIDEATNHFDSTLKIGEGGYGSIYIGILRHTQVAIKILNPNNSQGPVEYQQEVDVLSKMRHPNIITLIGACPEGCSLVYEYLPGGSLEDSLNCKDNSPPLSWQNRVRIATEICAALVFLHSNKAHSLVHGDLKPANVLLDANLVSKLSDFGTCSLLHSDGSKSVPTDVTGTIAYLDPEASSSGELTPKSDVYSFGIILLRLLTGRPALRIANEVKYALDSGTLNNLLDPLAGDWPFVQAEQLARLALRCCETVSVNRPDLATEVWRVLEPMRASSGGSSSFHLGRNEHRIAPPYFICPIFQEVMQDPHVAGDGFTYEAEAIRAWLDSGHDTSPMTNVKLSHTSLIANHALRSAIQEWLQHHW
Length830
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-0.415
Instability index49.39
Isoelectric point5.83
Molecular weight92666.69
Publications
PubMed=23518688

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33100
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.35|      28|     293|     439|     470|       2
---------------------------------------------------------------------------
  440-  467 (47.70/40.09)	ALREAEDLRSRAETSTLQ..LPQYFTDFSF
  675-  704 (44.65/23.02)	ALRIANEVKYALDSGTLNnlLDPLAGDWPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.92|      44|      70|     199|     247|       3
---------------------------------------------------------------------------
  199-  247 (64.93/63.41)	GYLiHTREAAM.YDTESeyASPRPSI..SASDLLQtfSTPESEHRHI....SRVHS
  270-  320 (62.99/42.62)	GSL.NTDEGEIeFDASG..ATGRATVmsSPSNLPD..GVDDSFHDKIrqatSEAHS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33100 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SASDLLQTFSTPESEHRHISRVHSTDSVQQLLSNESSSEHSERVSDGSLNTDEGEIEFDASGATGRATVMSSPSNLPDGVDDSFHDKIRQATSEAHSSKREAFAETLRRQKAENNALDAIRRAKQSESAYSEELKRRKD
224
362










Molecular Recognition Features






MoRF SequenceStartStop




1) MALVTPIPAM
1
10