<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33098

Description Uncharacterized protein
SequenceMTNNPLAYLVFVTASLVLISSVATEGEEQKIGTVIGIDLGTTYSCVGVYHNKHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAAKNPERTIHDPKRLMGRKFDDPDVQRDIKFLPYKVVNKDGKPYIQVKVKGEDKVFSPEEISAMILTKMKETAEAFLGKKIKDAVITVPAYFNDAQRQATKDAGAIAGLNVVHIINEPTGAAIAYGLDKKGGETNILVYDVGGGTFDVSILTIDNGVFEVLSTSGDTHLGGEDFDHRVMDYFIKLVKKKYNKDISKDHKALSKLRRECERAKRALSNQHQVRVEIESLFDGVDFSEPLTKARFEELNMDLFKRTMEPVKKALKDAGLKKSEIDEIVLVGGSTRIPKIQQLLKDFFDGKELNKGTNPDEAVAYGAAVQGGVLSGEGGEETQNILLLDVAPLSLGIETVGGVMTKVIPRNTAIPTRKSQVFTTYQDQQTTVSIKVYEGERSLTKDNRELGKFDLTGILPAPRGVPQVEVTFEVDANGILQVKAEDKVAKTSQTITITNDKGRLTEEEIEEMIREAEEFAEEDRIVKEKIDARNKLETYVYNMKSTLNDKEKLAEKISEEDKEKMEEVLKEALEWLEENVNADKDDYEQKLKETESVCNPVIKSVYEKTSGESEEDGEDGHDEL
Length657
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-0.500
Instability index33.83
Isoelectric point5.01
Molecular weight73108.82
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33098
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.03|      49|      54|     540|     593|       1
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  540-  593 (68.92/55.21)	EEIEEMIREAEEFAEEDrIVKEKIDARNKL.ET.YVYN..MKSTLndkEKLAEKiSEE
  596-  648 (72.10/41.87)	EKMEEVLKEALEWLEEN.VNADKDDYEQKLkETeSVCNpvIKSVY...EKTSGE.SEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     304.98|     105|     193|     201|     312|       3
---------------------------------------------------------------------------
  201-  312 (159.96/139.63)	INEPT..GAAIAYG.......LDKKGGE..TNILVYDVggGTFDVSILTIDNGVFEVLS..TSGDTHlGGEDFdHRVMDYFIKLVKKKY..NKDISKDHKALSKLR.RECERAKRALSnqhQVRVEIE
  386-  506 (145.01/103.20)	LNKGTnpDEAVAYGaavqggvLSGEGGEetQNILLLDV..APLSLGIETVGGVMTKVIPrnTAIPTR.KSQVF.TTYQDQQTTVSIKVYegERSLTKDNRELGKFDlTGILPAPRGVP...QVEVTFE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.82|      17|      18|     131|     147|       4
---------------------------------------------------------------------------
  111-  122 (20.53/10.19)	VQRDIK.....FLPYKV
  131-  147 (27.21/15.77)	IQVKVKGEDKVFSPEEI
  151-  167 (26.07/14.83)	ILTKMKETAEAFLGKKI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33098 with Med37 domain of Kingdom Viridiplantae
Unable to open file!