<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33096

Description Uncharacterized protein
SequenceMRHLVVEACISRNLLDTSAYLWPGFVIVGTSQVPQGIAGSISCWSLVMKGSPLTPSLTNSLITTPASSLAEIEKMYEVATTGSEDEKIAAASILCGASLFRGWSIQEHVIIFIVTLLSPPAPADLSGSYSHLISSAPFLNVLLVGISPVDCVQIFSLHGVVPLLAGALMPICEAFGSGIPNVTWTLPTGEVISSHAVFSTAFTLLLRLWRFDHPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLECFGKSPKDRMARRRFSKVIDISVEPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKASKGGSQSLTPSSGSSSLSTSGVDDSSDQLKLPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKILADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLASVEQQIEKILAATGVDVPRLPADGISAATLPLPLAALVSLTITYKLEKATERFLVLVGPALDSLAAACPWPCMPIVTSLWTQKVKRWSDFLIFSASRTVFHHNSDAVIQLLRSCFTCTLGLTPTSQLCSYGGVGALLGHGFGSLYPGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIAARELPTEQAERLRKTKDGSRYGIGQVSLSLAMTRVKLAASLGASLVWISGGLNLVQALIKETLPSWFISVHGEEDELGGMVPMLRGYALAYFAILSSAFAWGVDSSSPASKRRPRVLWLHLEFLVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLEVDVGVIKRLSKSLRQWNEEDLALALLCAGGLGTMGAATELIVETCHQL
Length824
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.08
Grand average of hydropathy0.340
Instability index46.66
Isoelectric point6.40
Molecular weight88760.22
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33096
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.08|      33|      61|     130|     162|       1
---------------------------------------------------------------------------
   88-  119 (35.92/18.59)	...IAAASILcgASLFRGWSIQEHVII.FIVTLLSP
  130-  162 (56.56/33.51)	SHLISSAPFL..NVLLVGISPVDCVQI.FSLHGVVP
  194-  225 (48.59/27.75)	SHAVFSTAF....TLLLRLWRFDHPPLdYVLGDVPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.99|      28|      71|     369|     398|       3
---------------------------------------------------------------------------
  369-  398 (45.20/35.98)	AHGSLSPRELATGlkILADFLPATLGTMVS
  439-  466 (48.79/32.40)	ATGVDVPRLPADG..ISAATLPLPLAALVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.42|      11|     135|     349|     359|       7
---------------------------------------------------------------------------
  349-  359 (23.37/12.81)	PAWDILEAA.PF
  486-  497 (18.05/ 8.25)	PALDSLAAAcPW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33096 with Med33 domain of Kingdom Viridiplantae
Unable to open file!