<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33094

Description Uncharacterized protein
SequenceMGSIGEINGDELVLDVDETIFVAVAEDVERSKTTVLWAARNFSGKKICLLYVHRPARPASWTHKKLAGGTFRKNAVKVIERVDKQKVDEIMNSYLHLLSETEVQTDKLCIAGQNIEEGIVELIARHNIKWLVMGAASDKHYSWRMTDLKSKKALFVCKKAPDSCHIWFLCKGYLIFTRATNDDSNNRQTMPPLVQLDSDNETRKSEKLESSYMRRRLRYWRSLLEQDGEKDSGQLEREKVEPQPIPSSSGSGSSFGEPVGPEPIGPELAGSDTITTSNVEEKKREGNVAREVHRYDKAMHDIGQSERTVYGEARNEKEDDSTMEALCKAKALDGLCIKELSRRKKLEELLEKEKDEVKMVIDQNNGFMKKLQMVQGDNLKLESQIRKLHDLEKEHGEKFDTAMELLKSFRQKRDQIRIDHENAIKEVNTLKRLIKGKNVESSGSEMLDYSFMEINEATNEFDPSWKLGEGKYGSVYKGNLQNLQIAVKMLPSYGSQNHFEFERRVEILSRVRHPNLVTIVGTCPESRSLIYQYIPNGSLEDCLSTENNVPALSWESRIRIASEICSALLFLHSNVPCIIHGNLKPSKILLDSNLVTKINDYGISQLIPIDGIDKSDLYVDPHYFVSGEMTLESDIYSFGMILLQLLTRRPLSGILRDVKCALENDNISAVLDNSAGDWPVARGKKLANVAIRCCKKNPLNRPDLAVILRIIDRMKSPEVPLPESSSYLNQKAPRKPPSHYLCPIFQEVMKDPLIAADGFTYEAEAIREWLANGHDTSPMTNLKMEDCNLIPNHALHLAIQDWQNQW
Length806
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-0.510
Instability index42.16
Isoelectric point6.19
Molecular weight91515.46
Publications
PubMed=23518688

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33094
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.79|      18|      18|     233|     250|       1
---------------------------------------------------------------------------
  233-  250 (33.50/20.60)	GQLEREKVEPQPI.PSSSG
  252-  270 (30.29/17.94)	GSSFGEPVGPEPIgPELAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     235.64|      74|     631|      82|     166|       2
---------------------------------------------------------------------------
   82-  166 (116.70/99.89)	VDKQKVDEI....MNSYLHLLSETEVQTDKLCIAGQNIEEGivELIARHNI........KWLVMGaasdkHYSWRMTDLKSKKalfvCKKAPD.SCHI
  711-  797 (118.93/76.92)	IDRMKSPEVplpeSSSYLNQKAPRKPPSHYLCPIFQEVMKD..PLIAADGFtyeaeairEWLANG.....HDTSPMTNLKMED....CNLIPNhALHL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33094 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KDSGQLEREKVEPQPIPSSSGSGSSFGEPVGPEPIGPELAGSDTITTSNVEEKKREGNVAREVHRYDKAMHDIGQSERTVYGEARNEKEDDSTMEA
230
325










Molecular Recognition Features






MoRF SequenceStartStop




NANANA