<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33086

Description Uncharacterized protein
SequenceMDQSQRTVAAPSSSRSYQFHPARAAIIDLFNLYLGRGNRQKPDESIRDPPNKSQKRVHAPNRDLPPRNEQFILDFEQLQSQFGDPDQLRTITESVLISMVLQCSNHAPRAEFLLFALRTLCRISYINWDTFLPSLLSSVSAAEASLSQVAQAATAGSSATSSQSLAPVASNTIPSTLLPSAHGIGSSSPSGNEPGNVQQVARAGQRVRAAAINSLRQLSCKIILIGIEFNLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSAGKSWRSAKTLAEWLRSCLDVIWLLVEEGKSRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRDAMAMHMLMLDQHLHCPTFGTHRISSQSTANVSVEAVAHLRYSPITYPSVLGEPLCGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSAQAGPIPGAVFTSDMICEAIIDRIVELLNLTNSGNIKFENANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGVDKHILRTNHVTWLLAQIIRVELVMTALNADAKKVETTRKILSFHREDRTDPNNPQSVLLDFVSSCQNLRIWSLSATTRAFLNNEQLLKGKQIDEWWKSKGERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEMPGLQPNDRVMMMQEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRVTIMTLAITIKTRGIADADHLVYLQTMLEQILATSQHTWSERTLRHFPTLLRETLIRRVDKRSLSIQAWQQAETTVINQCTQLLSPSAEPAYVMTYLSHSFPQHRQYLCAGACLLMQGHPDNINSANLARVLREVSPEEVTANIYTLVDVLLHHVRKDLQQGHNLKEVLAKQDANLAFFFWTHEMLPLDIFLLALIDRDDDPHALIIAKSLLVNEALLQRIKGYCSNRGPPEHWLNTQLFNRNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVVYRLIENSAFELADIILSAYAKFLAYHPLRFTFVRDILAYFYGHLPGNLVVGVLKVLDLSKIPLSESFPQYITSSSAPTCPPLDYFATLLLNLVNNVIPPLSSNCSSRSGSMADFLNSSVRPPHGKTPGASQPGPANASEGHKAFYQIQDPGTYTQLVLETAVIEILSLPVSASDIVSSLVKIIVNIQSTLIQSGNNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRSTCGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHTQLYIEASRVAIDTWWLNDGKRSEGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLEGTHIIIRNLRPVTSVAMLRVAFRIMGPLLPRLANTRTLFNKTLALLLSTMVDVFGKNSQTPVPVEASQIADLIDFLHHIVHYEGQGGAVQSSSKPRPDILALIGRAADSLRPDVQHLFSHLKTDPNSSIYAAAHQNTAKTSTS
Length1583
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.08
Grand average of hydropathy-0.040
Instability index45.25
Isoelectric point7.43
Molecular weight176612.07
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33086
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.48|      27|     124|    1039|    1065|       1
---------------------------------------------------------------------------
 1039- 1065 (51.14/27.52)	EALLQRIKGYCSNRGPPEHWLNTQLFN
 1167- 1193 (49.34/26.30)	ESFPQYITSSSAPTCPPLDYFATLLLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.21|      19|     124|      86|     129|       2
---------------------------------------------------------------------------
   66-   84 (34.28/49.10)	PRNEQFILDFEQL..QSQFG.D
  108-  129 (22.93/15.04)	PRAEFLLFALRTLcrISYINwD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.39|      25|     213|     130|     178|       7
---------------------------------------------------------------------------
  132-  156 (39.58/50.98)	LPSL..LSSVSAAEASLSQVAQAATAG
  178-  204 (39.81/ 9.41)	LPSAhgIGSSSPSGNEPGNVQQVARAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     183.51|      58|     398|     883|     941|       9
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  883-  941 (102.49/71.15)	VDKRSLSIQA....WQQAETTViNQCTQL.LSPSAEPAYVMT.......YLSHSFPQHRQYLCAG.ACLLMQ
 1286- 1356 (81.02/51.05)	VNIQSTLIQSgnngFHGAANGV.GQGSVLpTSPSGGSTDSMSasrstcgINTASFVSRSGYTCQQlSCLLIQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.73|      28|     398|     787|     815|      12
---------------------------------------------------------------------------
  787-  815 (47.23/38.98)	IFRLAENlCMNLILSLRDFF..SVK.REGKGP
 1199- 1229 (44.50/31.24)	IPPLSSN.CSSRSGSMADFLnsSVRpPHGKTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.69|      40|     398|     710|     757|      13
---------------------------------------------------------------------------
  710-  757 (55.37/64.57)	YTRLLLISPhsmFRSHFSQ..LAQRNASLlskPG...VTllVLEILNYRLLPL
 1121- 1165 (63.32/45.95)	YAKFLAYHP...LRFTFVRdiLAYFYGHL...PGnlvVG..VLKVLDLSKIPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33086 with Med23 domain of Kingdom Viridiplantae
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