<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33085

Description Uncharacterized protein
SequenceMGDGALIVAVAIKGNNSKTKGVVRWALQQFASQEHVVFKLLHVQPRDSITVSTTRSNSTTTVYKKDVDRKTREMLIPSRDMFAQREVELDIMVLESDDVADAISKAVQDHGISELVIGASSSIIFSWKLKRSNLSSRISDVTPRFCTVHVISKGKLLNVRKSDIDIETSIADDRSENQFSSSSHSGSVSSTSSHQFSSTPLLFQRIQALSTVNQKVGTNMGTKNHIDTHHNRAGSLDVDDIKKLNQKGYYRTNSSGIGYGGSDIHSRRSSVTEDGSSSSCYSDPTSSTSQMQDLNQRRSEEATRLKNLTIREEYAEEVVEMERERQEEAENEAELVRECVEREIEDRLEAEARAEDVRKEKQRLEDALEGGPLQRQQYMKFEWEEIVEATSSFSDELKVGTGGYGSVYRCNLHHTIVAVKVLHSDKSSLTKQFHQELEILSKIRHPHLLLLLGACPERGSLIYEYMHNGSLEERLMKRRPNADAPQPPLRWFERFRIAWEIASALYFLHTNEPRPIVHRDLKPANILLDRNNVSKIGDVGLSKMVNLDPSHASTVFNDTGPVGTFFYIDPEYQRTGVVTTESDIYAFGIILLQLVTARSAMGLAHTLEKALRDQTGKFTEILDKTAGDWPVKEAKEMVMLGLRCSEMRKRDRPDLGKEILPVLERLKDVACNARDLFAETLIDHHHHAPSHFYCPITKDVIENPCVAADGYTYEKRAIKEWLQQNRKSPMTDLPFPSDSLLPNHSLLSAIKEWRSHLIQ
Length759
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-0.526
Instability index44.51
Isoelectric point6.24
Molecular weight85799.80
Publications
PubMed=23518688

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33085
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.96|      16|      96|     180|     195|       1
---------------------------------------------------------------------------
  180-  195 (29.24/21.12)	SSSSHSGSVSSTSSHQ
  277-  292 (31.72/23.65)	SSSCYSDPTSSTSQMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     193.83|      65|      73|      31|      98|       2
---------------------------------------------------------------------------
   31-   98 (97.66/76.18)	ASQEHVVFKLLhVQPRDSITVS..TTRSNSTTTVykKDVDRKTREMLIPSR.DMFAQREVELDIMVLESDD
  106-  173 (96.17/63.42)	AVQDHGISELV.IGASSSIIFSwkLKRSNLSSRI..SDVTPRFCTVHVISKgKLLNVRKSDIDIETSIADD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.14|      26|      65|     295|     320|       3
---------------------------------------------------------------------------
  295-  320 (42.03/32.78)	NQRRSEEATRLKNLTIREEYA....EEVVE
  322-  341 (33.67/24.61)	ERERQEEAENEAEL.VR.........ECVE
  360-  388 (37.43/28.28)	EKQRLEDALEGGPLQ.RQQYMkfewEEIVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.24|      30|      33|     207|     239|       4
---------------------------------------------------------------------------
  207-  239 (48.56/38.70)	QALstvNQK..VGTNM.GTKNHIDTHHNRAGSLDVD
  242-  274 (43.68/27.01)	KKL...NQKgyYRTNSsGIGYGGSDIHSRRSSVTED
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33085 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) YYRTNSSGIGYGGSDIHSRRSSVTEDGSSSSCYSDPTSSTSQMQDLNQRRSEEATRLKNLTIR
249
311










Molecular Recognition Features






MoRF SequenceStartStop




NANANA