<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33084

Description Uncharacterized protein
SequenceMSSEVKQLIVVAEGTAALGPYWHTIVSDYLEKIIRSFCGSELNGERNVELSLVIFNSHGSYCACLVQRSGWTKDVDIFLHWLSSIQFAGGGFSEAATAEGLAEALMMFSPPSGQAQPSNDLKRHCILITASNPHSLPTPVYRPKLPNAERNENGDAQSESRLSDAETVASYFSRCSVSLSVICPKQLPKIRALYNAGKLNPQSPDLSIDTVKNTFYLVLIPENFVEARAALSHSATNLPQTQSPVKVDRSTVAPSLPVTGQPPAPVPSANGPILNRQPVSIGPVPTATVKVEPSTVPSMAAVSTFPHIQSVARPATQAIPSIQTSSPSPVSQEMVTNAENAPDVKPVVTGMTPPLRTGPPGGANVNLLNNLSQVRQVMSSAALAGAASSTGQSAVAMHMSNMISTGMATSLPPSQTVFSSGQQGITSMAGSGALMGTVQAGQSPGPNNSFSPQTTSNVASNLGVSQPMPGMNQGSHSGAQMMQGGIPMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSAPNMQLSQPSSAALQTSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASASDSLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIPNQQQQQQQQLQQQHQQQQQQQQQQQQQQQQIQQQQQQQQHHHQQQQLPQLQQQQQHQLSQLQHHQQQQQQQQQQQQHQLSQLQHHHQQQQQQTSPLNQMHQQTSPLNQMHQQTSPLNQMHQQTSPLNQMQQQQTPQQMVGSAAVMGGQAFAQAPGRSQQGGGGGGGQPNMPGAGFMG
Length852
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.04
Grand average of hydropathy-0.496
Instability index66.25
Isoelectric point8.82
Molecular weight91392.61
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33084
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     175.22|      19|      19|     766|     784|       1
---------------------------------------------------------------------------
  697-  715 (35.69/ 9.10)	QQQQQQQQQI..QQQQQQQQH
  716-  736 (33.17/ 7.92)	HHQQQQLPQLqqQQQHQLSQL
  739-  757 (39.53/10.89)	HQQQQQQQQQ..QQQHQLSQL
  775-  794 (34.77/ 8.67)	HQQTSPLNQM.hQQTSPLNQM
  795-  813 (32.05/ 7.40)	HQQTSPLNQMqqQQT.P.QQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     342.87|      69|      69|     220|     288|       2
---------------------------------------------------------------------------
  220-  283 (106.81/40.80)	........IPENFVEARAALS...H......SA..............TN.LP..QTQSPVKVDRSTV.....APSL.P.VTGQ.PP...APVPSA...N.GPI.........LN.....RQPVSIGP
  284-  382 (58.73/18.74)	VPTAT.vkVEPSTVPSMAAVStfpHiqsvarPA..............TQaIPsiQTSSPSPVSQEMVtnaenAPDVkPvVTGMtPPlrtGPPGGA...N.VNL.........LNnlsqvRQVMSSAA
  383-  446 (50.24/14.85)	LAGAA.....................sstgqSAvamhmsnmistgmaTS.LP..PSQTVFSSGQQGI.....T.SM.A.GSGA.LM...GTVQAG...Q.SP.......................GP
  447-  505 (54.25/16.69)	..........NNSFS....................................P..QTTSNVA...SNL.....GVSQ.P.MPGM.NQ...GSHSGAqmmQ.GGIpmnqnmmsgLG.....QGNVSSGT
  509-  571 (72.84/25.21)	MPTPGvgqQAQSGIQQLGGSN...S......SA..............PN.M...QLSQP.....SSA.....A..L.Q.TSQS.KY...VKVWEG...NlSGQ.........RQ.....GQPVLI..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.56|      10|      69|     686|     695|       3
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  673-  682 (20.87/ 6.90)	QIPNQQQQQQ
  686-  695 (22.56/ 8.14)	QQQHQQQQQQ
  758-  767 (23.13/ 8.56)	QHHHQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.53|      38|      40|     135|     172|       4
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  135-  172 (65.77/42.44)	SLPTPVYRPK.LPNAERNEN.GDAQSESRLSDAETVASYF
  176-  215 (56.76/35.58)	SVSLSVICPKqLPKIRALYNaGKLNPQSPDLSIDTVKNTF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.95|      16|      18|     627|     643|       5
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  627-  643 (24.57/23.14)	FLGQLQDKKlCAVIQL..P
  647-  664 (23.38/15.93)	LLLSVSDKA.CRLIGMlfP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.47|      13|      18|     821|     835|       6
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  821-  835 (20.56/14.72)	GGQafAQAPGRSQQG
  840-  852 (27.91/13.70)	GGQ..PNMPGAGFMG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33084 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSHSATNLPQTQSPVKVDRSTVAPSLPVTGQPPAPVPSANGPILNRQPVSIGPVPTATVKVEP
2) MAGSGALMGTVQAGQSPGPNNSFSPQTTSNVASNLGVSQPMPGMNQGSHSGAQMMQGGIPMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSAPNMQLSQPSSA
3) QQIQQQQQQQQHHHQQQQLPQLQQQQQHQLSQLQHHQQQQQQQQQQQQHQLSQLQHHHQQQQQQTSPLNQMHQQTSPLNQMHQQTSPLNQMHQQTSPLNQMQQQQTPQQMVGSAAVMGGQAFAQAPGRSQQGGGGGGGQPNMPGAGFMG
4) RPATQAIPSIQTSSPSPVSQEMVTNAENAPDVKPVVTGMTPPLRTGPPGGANVNLLNNL
5) SAVAMHMSNMISTGMATSLPPSQTVFSSGQQGIT
230
428
704
313
393
293
543
852
371
426










Molecular Recognition Features






MoRF SequenceStartStop




NANANA