<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33083

Description Uncharacterized protein
SequenceMGDGSSTRSNSSSSSSEKPEWLQQYNLVGKIGEGTYGLVFLARTKTPPKRPIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINFADMSLYLAFDYAEYDLYEIIRHHRDKVGHSLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGDEHGIVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGSKHYTSAVDMWAVGCIFAELLTLKPLFQGAEAKSSQNPFQVDQLDKIFKILGHPTMEKWPTLVNLPHWQADLQHIQAHKYDSAGLHNVVHLNLKSPAYDLLSKMLEYDPLKRITASQALEHEYFRMDPLPGRNAFVASQPMEKNVSYPTRPVDTNTDFEGTTSINPPQAVAAGNVAGNMAGAHGMGSRSMPRPMVAHNMQRMQPQGMMAYNFPAQGGMNPSVPMQQQQQQRGMAQPHQQQQLRRKDPGMGMSGYAPPNKTRRL
Length472
PositionKinase
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.08
Grand average of hydropathy-0.454
Instability index41.94
Isoelectric point9.22
Molecular weight52986.07
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33083
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     173.42|      41|      41|     382|     422|       1
---------------------------------------------------------------------------
  355-  376 (23.56/ 8.46)	................SYPtRP.VDTNTDF....EGTTSINPP
  382-  422 (78.50/45.03)	GNVAGNMAGAHGMGSRSMP.RPMVAHNMQRMQP.QGMMAYNFP
  425-  466 (71.36/40.27)	GGMNPSVPMQQQQQQRGMA.QPHQQQQLRRKDPgMGMSGYAPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.31|      25|      44|     166|     190|       2
---------------------------------------------------------------------------
  166-  190 (43.53/29.70)	GDEHGIVKIADFGLARIYQA..PLKPL
  209-  235 (40.78/27.39)	GSKHYTSAVDMWAVGCIFAEllTLKPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.41|      35|      61|      54|      92|       4
---------------------------------------------------------------------------
   54-   92 (51.97/45.16)	IKKFKQSKDGDGVSPTAIREIM..LLREIS..HENVVklvnVH
  114-  152 (51.45/34.87)	IIRHHRDKVGHSLNQYTVKSLLwqLLNGLNylHSNWI....IH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.07|      23|      45|     260|     283|       5
---------------------------------------------------------------------------
  260-  283 (41.85/30.62)	LGHPT......MEKWPTLVNLPHWQAdLQH
  302-  330 (33.23/18.97)	LKSPAydllskMLEYDPLKRITASQA.LEH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33083 with CDK8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AFVASQPMEKNVSYPTRPVDTNTDFEGTTSINPPQAVAAGNVAGNMAGAHGMGSRSMPRPMVAHNMQRMQPQGMMAYNFPAQGGMNPSVPMQQQQQQRGMAQPHQQQQLRRKDPGMGMSGYAPPNKTRRL
343
472










Molecular Recognition Features






MoRF SequenceStartStop




1) MSGYAPPNKTRRL
2) QQLRRKDP
3) TYGLVFLARTKTPPKRPIAIKKFK
460
449
35
472
456
58