<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33082

Description Uncharacterized protein
SequenceMDNNNWRPSLPNGEPAMDTGDWRSQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIYSGAVNQTDYLRKISMKMLTMETKSQNAAGSSSSIPPANNATSMDSIPTNQGHLLPTNQSQAPQTLLSQTMQSNTGSGITGSTALPSSMPPVSSITNNNVTSVVNQNSNMQNVAGMLQDSSGQHGLSSSMFSGSQRQMLGRPHAMSSQQQQQPQSAQYLYQQQLQQQLLKQNFQSGNVPNPNSLLPSHMQQQQQNVLQPNQMHSSQQPGIPTSATQPSTVSSAPLQGLHTNQQSSPQLSAQQTATQSMLRQHQSSLLRQHPQSQQTSGIHQQQTSLPQQSISPLQQQQAQMMRQQAANSSGIQQKQMMAQHVVGDMQQQHQQRLLNQQNNIINIQQQQSQQQKQQPTAQQQMMSQQNSLQATHQQPLGTQNNVAGLQQPQQQLLSSQVGNSSLQTNQHSMHMLSQPTVGLQRTQQAGHGMFSSQGQQSQNQPSQQQMMPLQSHHQQIGLQQQPNLLQQDVQQRLQSSGQVTGSLLPPQNVVDQQRQLYQSQRPLPEMPSSSLDSTAQTESANGVDWQEEVFQKIKTMKEAYLPDLNEIYQRVAVKLQQDSLPQQQRSDQFEKLKQFKTMLERMIQFLSVSKSNIMPALKDKVAYYEKQIISFLNAHRPKKTAQQGQLPQSQMQPMQQQQSQNVQDQSHDSQTNPQMQSMSLPGSGQRAQQSSLTNLQNNVLSSRPGVSAPQQNIPSSIPASSLETGQGNALNNGQQISMGSMQQNASQQVNNNSASAQSGLSTLQSNVNQTQISSSMLQQQHLKQQQDQQMLKQQFQQRQMQQQLIQKQQLIQQQQQLQARQQAAQNDMNDMTARQGMNVSRGMFQQHSLQGQRATYPLQQLKPGSQLPVTSPQLLQGASPQMTQQHMSPQVDQKNLSSSVNKLGTPLQPANSPFVVPSPSTPMAPSPMQVDCEKPSGASSLSMGNTGRQQATGMQGVVQSLAIGTPGISASPLLQEFTSPDGNNLNPLISTSGKPSATELPIERLIRAVKSISPQALSSAVSDIESVVSMVDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQEGMMATKKMKRHTTAMPLSIASLGGSVGDNYKQFACSETSDLESTATSDGKKARTETEHALLEEIKEINQRLIDTVVEISDDEDAADPSEEATASKGCEGTTVRFSFIAVSLSPALKAHLSSTQMSPIQPLHLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAKTWDACARGVICEYAQQFGGGTFSSKYGTWEKFVAAS
Length1329
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.03
Grand average of hydropathy-0.755
Instability index70.77
Isoelectric point9.10
Molecular weight145736.28
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33082
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            11|     607.72|      57|      57|     209|     265|       1
---------------------------------------------------------------------------
  184-  226 (62.96/14.02)	M...LQDSSGQHGLSSSMF.SG.....................SQ...RQ........MLG...............RPHAM.SSQQQQQP...........QSA.QY
  227-  285 (88.75/23.52)	L...YQQQLQQQLLKQNFQ.SGNVPNPNSL.LPS......HMQQQ...QQ........NVL...............QPNQMhSSQQPGIP...........TSAtQP
  286-  334 (56.83/11.76)	S...TVSSAPLQGLHTNQQ.SS....PQ...L.S......AQQTA...TQ........SML...............RQHQ..SSLLRQHP...........QSQ.QT
  337-  379 (49.46/ 9.05)	I...HQQ..QTSLPQQ............SI.SP........LQQQ...QA........QMM..............rQQAAN.SSGIQQKQ...........MMA.QH
  380-  425 (53.44/10.51)	VvgdMQQQHQQRLLNQQNN.IINIQQQQS.............QQQ...KQ................................QPTAQQQM...........MSQ.QN
  426-  470 (50.89/ 9.58)	S...LQATHQQPLGTQNNV.AG.L..................QQP...QQ........QLL..............sSQVGN.SSLQTNQ............HSM.HM
  523-  581 (41.48/ 6.11)	L...LQQDVQQRL.....QsSGQV.TG.SL.LPP...............Q........NVVdqqrqlyqsqrplpeMPSS..SLDSTAQT...........ESA.NG
  629-  691 (42.01/ 6.30)	E...KLKQF.KTMLERMIQ.FLSVSKSN.I.MPAlkdkvaYYEKQiisFL........NAH...............RPKK..TAQQGQLP...........QSQ.MQ
  692-  769 (50.63/ 9.48)	P...MQQQQSQNVQDQSHD.SQTNPQMQSMsLPG......SGQRA...QQssltnlqnNVL.............ssRP.GV.SAPQQNIPssipassletgQGN.AL
  770-  820 (53.19/10.42)	N...NGQQISMGSMQQN.A.SQQVNNNSAS.AQS......GLSTL...QS........NV................NQTQI.SSSMLQQ................QH
  821-  861 (58.08/12.22)	L...KQQQ.DQQMLKQQFQ........QR...........QMQQQ..............LI...............QKQQL..IQQQQQL...........QAR.QQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.41|      15|      19|       1|      19|       2
---------------------------------------------------------------------------
    5-   19 (30.84/22.67)	NWRPSLPNG......EPAMDT
   21-   41 (23.57/ 6.34)	DWRSQLPPDsrqkivNKIMET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     186.13|      36|      37|     903|     938|       3
---------------------------------------------------------------------------
  903-  938 (66.95/27.99)	G....SQ...........L.PVT.........SPQLLQGASPQMTQQHMSP.QVD.QKNLSSS
  943-  978 (42.80/15.24)	G....TP...........LqPAN.........SPFVVPSPSTPMAP...SPmQVDcEKPSGAS
  986- 1027 (40.97/14.27)	G....RQqatgmqgvvqsL.AIG.........TPGI..SASP.LLQEFTSP...D.GNNLNPL
 1032- 1078 (35.41/11.34)	GkpsaTE...........L.PIErliravksiSPQALSSAVSDI..ESVVS.MVD.RIAGSAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.69|      10|     280|     614|     623|       6
---------------------------------------------------------------------------
  614-  623 (19.23/ 7.62)	LQQDSLPQQQ
  883-  892 (19.46/ 7.82)	FQQHSLQGQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.25|      24|      53|      88|     119|       7
---------------------------------------------------------------------------
  101-  149 (22.93/21.21)	SSIPPannatsMDSIPTNQghllptnqsqapqtllsqTMQSNTGSGiTG
  155-  183 (38.32/14.68)	SSMPP......VSSITNNN.............vtsvvNQNSNMQNV.AG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.72|      15|      19|      48|      64|      13
---------------------------------------------------------------------------
   48-   64 (21.87/19.71)	FSGpeGINE...LRRIAARF
   69-   86 (21.84/11.75)	YSG..AVNQtdyLRKISMKM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33082 with Med15 domain of Kingdom Viridiplantae
Unable to open file!