<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33081

Description Uncharacterized protein
SequenceMATKSEKAIGIDLGTTYSCVGVWMNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPHNTVFDAKRLIGRRFSDPSVQSDMRHWPFKVVSGPGDKPMIVVSYKNEEKQFSPEEISSMVLIKMKEVAESFLGSTVKNAVVTVPAYFNDSQRQATKDAGSISGLNVLRIINEPTAAAIAYGLDKKGTKTGERNVLIFDLGGGTFDVSLLTIEEGVFEVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISGNARALRRLRTACERAKRTLSSTAQTTLEIDSLHEGVDFYATISRARFEEMNMDLFRKCMDPVEKVLRDAKTDKSSVHEVVLVGGSTRIPKIQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILTGEGSDKVQDLLLLDVAPLSLGLETAGGVMTVLIPRNTTVPCKKEQVFSTYADNQPGVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNQITITNEKGRLSKEEIEKMVQDAEKYKAEDEQVKKKVEAKNSLENYAYNMRNTVKDEKLAQKLDQEDKQKIEKAINEAIDWIEGNQLAEVDEFEYKLKELEGICNPIISKMYQAGAGAGVPSEGMPETGGSSGAGGPKIEEVD
Length647
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-0.417
Instability index35.48
Isoelectric point5.35
Molecular weight71026.66
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33081
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.29|      19|      26|     205|     225|       1
---------------------------------------------------------------------------
  205-  225 (28.91/23.42)	LGGGTFDVSLltIEEGVFEVK
  233-  251 (35.37/22.15)	LGGEDFDNRL..VNHFVAEFK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.59|      13|      26|      41|      54|       2
---------------------------------------------------------------------------
   41-   54 (20.37/19.79)	PSYVAFtDTERLIG
   65-   77 (25.22/18.52)	PHNTVF.DAKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.57|      26|      26|     558|     583|       3
---------------------------------------------------------------------------
  524-  544 (31.89/19.70)	VQD...AEKYKAEDEQ..VKKKV.EAK
  558-  583 (41.50/27.78)	VKDEKLAQKLDQEDKQK.IEKAINEAI
  586-  612 (36.18/23.31)	IEGNQLAEVDEFEYKLKeLEGICNPII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.63|      34|     189|     169|     204|       4
---------------------------------------------------------------------------
  169-  204 (49.86/34.53)	GLNVLRIINePTaAAIAYGLD.KKGTKTGE.....RNVLIFD
  361-  400 (47.77/25.34)	GKELCKSIN.PD.EAVAYGAAvQAAILTGEgsdkvQDLLLLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.22|      13|      19|     105|     117|       6
---------------------------------------------------------------------------
  105-  117 (21.63/14.93)	MIVVSYKNEEKQF
  125-  137 (20.58/13.88)	MVLIKMKEVAESF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.52|      20|      20|     278|     297|       7
---------------------------------------------------------------------------
  278-  297 (31.16/19.14)	TLSSTAQTTLEIDSLHEGVD
  301-  320 (35.35/22.55)	TISRARFEEMNMDLFRKCMD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33081 with Med37 domain of Kingdom Viridiplantae
Unable to open file!