<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33080

Description Uncharacterized protein
SequenceMAARRVKGKDSNAVTAIAIDKDKNSQHALKWAVENIVVDSPNCILLHVQTKLRIGAGENTEAPHDNQEEAHQFFLPFRGFCARKGIIATEVLLHDIDIASAIVDYITNNSIANIVLGASARNSFLKKFKSADVPTTLLKTTPDTCAVFIVSKGKLLTSRSASRPQTPQQYSHQPSKQPVVLSTISDPGPTSSTSSESGRSSPALNGDFSPPPHYKPSLNMSSPSGFSNELYTSGHSAESNASFYSILGRSAYGGSSQSSTSMSEIADGEESLSGSSMTELNQNLEAEVRRLRIELQQFNASIGRENAPHLHGPRDTSEYEKLEEAKVAREMLRALSEMDKQKTQSAIQATEMAQRLAEMEKQKRRLVEMQARFREQEMANSVSYRRYSIKDVEGATDGFSDALKIGEGGYGPVYKAVLENTSVAIKILKSDVSQGLKQFQQEIEVLSCMRHPNMVILLGACPEYGCLVYEYMENGTLEDRLYCKDNTPPLSWRARFRIAAEIATGLLFLHQAKPEPLVHRDLKPANILLDRHFTSKISDVGLARLVPPAVADSFTHYHMTAAAGTFCYIDPEYQQTGMLGVKSDLYSFGVMLLQILTAMPAMGLSHRVEKAIEKKRLNEVLDPKISDWPEEETLVLAQLALQCCELRKKDRPDLATVLLPALSKLRDIATEDHQVHNNSNDTVSVSDAQNSVPLSPVSSSQTEDA
Length705
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-0.376
Instability index49.72
Isoelectric point6.06
Molecular weight77632.95
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33080
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.51|      20|      20|     323|     342|       1
---------------------------------------------------------------------------
  323-  342 (34.22/25.57)	EEAKVAREMLRALSEMDKQK
  344-  363 (32.29/23.69)	QSAIQATEMAQRLAEMEKQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.55|      21|      37|     158|     178|       2
---------------------------------------------------------------------------
  158-  178 (40.25/20.38)	SRSA.SRPQTPQQYSHQPSKQP
  195-  216 (35.30/17.06)	SESGrSSPALNGDFSPPPHYKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.69|      22|      39|     217|     240|       3
---------------------------------------------------------------------------
  217-  240 (34.29/28.21)	SLNMSSPSgfSNELYTSGHS.AESN
  259-  281 (32.40/19.03)	STSMSEIA..DGEESLSGSSmTELN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.82|      30|     610|      39|      69|       4
---------------------------------------------------------------------------
   39-   69 (49.10/37.49)	DSPN..CILLHVQTKLRIGAGENTEApHDNQEE
  650-  681 (47.72/30.82)	DRPDlaTVLLPALSKLRDIATEDHQV.HNNSND
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33080 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATEDHQVHNNSNDTVSVSDAQNSVPLSPVSSSQTEDA
2) GGSSQSSTSMSEIADGEESLSGSSMTELNQNLEA
3) SRSASRPQTPQQYSHQPSKQPVVLSTISDPGPTSSTSSESGRSSPALNGDFSPPPHYKPSLNMSSPSGFSNELYTS
669
253
158
705
286
233










Molecular Recognition Features






MoRF SequenceStartStop




1) SILGRS
245
250