<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33078

Description Uncharacterized protein
SequenceMSNNPPQSSGPQFRPMAPGPQGQHFVPAASQPFHHPFGHVPTNVQSQPPQFSQPIQQLFPVRPGQPGHITSSSQPVAAPYIQPQPNAPPMTGFGTSGPPFSSSYTFVPPSYGQQQPPSMVQPTSQMHAAGVPPAANSWAAPVNQSTTLVSPVQQTGQQTPVTLPTDPQGSLTPQSASDWQEHKSADGRKYYYNKQTKQSSWEKPLELMTPLERADASTVWKEFTTAEGRKYYYNKVTKESKWTIPEDLKLAREQAELASAKTSFSGAGSTPVSHMSASSSDLAVSTTVTSVVPSTSSTFPGHSSSPIPGGLPVPVTRPPPVAPVTPMSAATTDAEATAIKSDNIPSQGADDSNDGAPGQNNEAENKEMSVNGKANLTPTGDKANVEEPMVYATKQEAKAAFKSLLESVNVQSDWTWEQTTKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVKMLEECEELSSSMKWSKAMSLFENDERFKAVERQRDREDLFDNYIVELERKEREKAVEVHRQKMAEYRKFLETCDYIKASTQWRKIQDRLEDDERCSCLEKIDRLIGFEDYILDLEKEEEEMKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWSEYCIELKELPQYQAVASNTSGSTPKDLFEDVTEELEKQYHEDKSRVKDAMKSRKISMVSSWMFEDFKSAISEDLSTQPISEINLKLIYNDLVERMKEKEEKETRKLQRLAEEFTNLLRTFKDISAASNWEDVKQLVEESQEYRSIGDDSVSRGLFEEYITSLHEKAMEKERKRDEEKSRKEKEREEKEKRKDKDKERREKEREREKERGKERSSKREESDGEAVDVSEGHKDEKRKGKDRERKHRRRHHNSDEDVSSDRDDREESKKSSRKHGSDRKKSRKHANSPESDSESRHKRQKKEHRESSRRGGGNEELEDGEVGEDGEIKL
Length957
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-1.171
Instability index61.73
Isoelectric point6.14
Molecular weight109213.73
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33078
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.06|      40|      40|     176|     215|       1
---------------------------------------------------------------------------
  150-  176 (44.02/22.87)	SP.VQ....QTG......QQTPVTLPTDPQGSLTP...QSA
  177-  216 (77.12/45.50)	SD.WQEHKSADGRKYYYNKQTKQSSWEKPLELMTPLERADA
  217-  256 (59.92/33.75)	STvWKEFTTAEGRKYYYNKVTKESKWTIPEDLKLAREQAE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     488.84|      65|      65|     463|     527|       2
---------------------------------------------------------------------------
  396-  450 (59.51/32.72)	.............EAKA.AFKS..LLES.....V.NVQSDWTWEQTTKEIVHDKRYGALRTLGE...RKQAFNEYLGQ...RK...
  451-  523 (94.54/56.66)	K.VEaeerrrrqkKARE.EFVK..MLEE.....CEELSSSMKWSKAMSLFENDERFKAVERQRD...REDLFDNYIVEL.ERKERE
  524-  590 (86.29/51.02)	KAVE......vhrQKMA.EYRK..FLET.....CDYIKASTQWRKIQDRLEDDERCSCLEKI.D...RLIGFEDYILDL.EKEEEE
  592-  671 (68.44/38.82)	KRVEkehvrraerKNRD.AFRT..LLEE..hvaAGILTAKTYWSEYCIELKELPQYQAVASNTSgstPKDLFEDVTEEL.EKQYHE
  672-  734 (38.85/18.60)	DKSR....vkdamKSRKiSMVSswMFEDfksaiSEDLSTQPISEINLKLIYND....LVERMKE...KE............EKETR
  735-  798 (80.01/46.73)	KLQR.........LA.E.EFTN..LLRT.....FKDISAASNWEDVKQLVEESQEYRSIGDDSV...SRGLFEEYITSL.HEKAME
  799-  863 (61.20/33.87)	KERK.....rdeeKSRK.E..K..EREE.....KEKRKDKDKERREKEREREKERGK..ERSSK...REE.SDGEAVDVsEGHKDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.11|      34|      35|     867|     901|       3
---------------------------------------------------------------------------
  867-  893 (36.42/19.35)	.........GKDRErKHRRRHHNSDEDVSSDRDDRE
  894-  927 (52.33/25.42)	ESKKSSRKhGSDR..KKSRKHANSPESDSESRHKRQ
  930-  954 (36.35/15.36)	EHRESSRR.GGGNE.......ELEDGEVGEDGE...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     247.81|      40|      61|      36|      79|       4
---------------------------------------------------------------------------
    4-   32 (38.10/19.85)	.......NPPQSSGP..QFRPMAP.GPQGqHfVPAASQ....P
   40-   79 (76.28/37.79)	VPTNVQSQPPQFSQPIQQLFPVRP.GQPG.H.ITSSSQPVAAP
   82-  109 (40.42/14.89)	.....QPQP...NAP.....PMTGfGTSG.P.PFSSSYTFVPP
  113-  141 (46.14/18.54)	.....QQQPPSMVQPTSQMHAA...GVP......PAANSWAAP
  292-  323 (46.87/21.56)	VPSTSSTFPGHSSSPIPGGLPVPV.TRPP.P.VAP........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.99|      14|      30|     343|     357|       7
---------------------------------------------------------------------------
  343-  357 (21.92/21.50)	NIPSQGaDDSNDGAP
  375-  388 (25.07/18.46)	NLTPTG.DKANVEEP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33078 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EEYITSLHEKAMEKERKRDEEKSRKEKEREEKEKRKDKDKERREKEREREKERGKERSSKREESDGEAVDVSEGHKDEKRKGKDRERKHRRRHHNSDEDVSSDRDDREESKKSSRKHGSDRKKSRKHANSPESDSESRHKRQKKEHRESSRRGGGNEELEDGEVGEDGEIKL
2) MSNNPPQSSGPQFRPMAPGPQGQHFVPAASQPFHHPFGHVPTNVQSQPPQFSQPIQQLFPVRPGQPGHITSSSQPVAAPYIQPQPNAPPMTGFGTSGPPFSSSYTFVPPSYGQQQPPSMVQPTSQMHAAGVPPAANSWAAPVNQSTTLVSPVQQTGQQTPVTLPTDPQGSLTPQSASDWQEHKSADGRKYYYN
3) TIPEDLKLAREQAELASAKTSFSGAGSTPVSHMSASSSDLAVSTTVTSVVPSTSSTFPGHSSSPIPGGLPVPVTRPPPVAPVTPMSAATTDAEATAIKSDNIPSQGADDSNDGAPGQNNEAENKEMSVNGKANLTPTGDKANVEEPMVYAT
786
1
243
957
193
393










Molecular Recognition Features






MoRF SequenceStartStop




1) ESRHKRQKKEHRE
2) GRKYYYN
921
187
933
193