<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33077

Description Uncharacterized protein
SequenceMEGNSNWKPNEQDGDSLANDWRSQHEPDLRKKIRNAMVVRLKKCFSNYDENQINNAAFNLEDKYYGMATSKDDYFRKIAQKVNLIEQKFRHVQSNNVQSRSSVNGTDTSHPAAQFQNQGQSLPTSLPYTHTSTSQQWLPQNMQSNLNNIHVSSGLPAQVPTTVSAAQNLNIQMSEGAHSNLLPGSQRPVQGRQQLLPHQPQSSSYMLQHQVDQQLLKEKIRHGNLRPPYMQQQQTSQDSTGKTANGSCGDWQEETYQKIRALREKHLPVLITMLQKVTDKLRQIDSLPQQNKHHESIEKLRVGRASLEQVIVFLNLHRSGISEKHRDMFSLYEKAVLRFTRNQTAAWRPMQQQQGQFPPSQIHQTPSQSQSGQVHVPQSLDSDQMNLRLMSTNQNVACSSVSALTASQTAMPSSLQTRPKMEAKDENNIKQHSNISPVQSSMFQQKQFHPLPMQQQLLQREQQQQPPPTNKQLQMAKNEMSDVRMKQGVNIKAGLLQQHLSSSQRQLPKPLASPAARMSNFSPSASSPQIQNYSSPQLVDQQILPTTTQSGGSPFVAPSPVTSFAPSPVPGGPEKPISVESPVSPPNQSQTAAQEHSLFTLPSEPTAERPIDRLIKAFQSSSPQSLAESVSDISSVISLADMIAGSFHSNGGARAGLAEDLSARTKFRLQQGETNPTKRFKRSISIQPLDIASQADSYKQFSSLESEVDSTASSGSKANMIEPGCALLQEINEINGRLVETVVSICNEDVNYPNEVTSGTVVTCSYAPVALCDTFEAHYNSGHISQIQPLRLLVPENYPYSPILIEKSPFDASVHKYEDLSARARSRLSLCMKELSEPMSLKEIAQAWDVCARATMAEYAERHGGGTFSSKYGPWETVLRP
Length881
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-0.697
Instability index73.18
Isoelectric point8.62
Molecular weight98013.68
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33077
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     648.94|     177|     235|      20|     254|       1
---------------------------------------------------------------------------
   25-  234 (266.22/171.01)	HEPDLRK.KIRNAMVVRLkKCFSNYDENqinnaafnledkyyGMATSK.DDYFRK..IAQKVNLIEQKFrHVQSNNVQSRSSVNGTDTSHPAAQFQN..QGQSLPTSLPYT..HTS.TSQQWLPQNMQSNLNNIHVSS..................GLPAQVPT..TVSAAQNLNIQMsegaHSNLLPGSQRPVQGRQ.Q...LLPHQPqsssymLQhqvdQQLLKekiRHGNLRPPYMQQQ.Q
  293-  474 (234.06/115.80)	HHESIEKlRVGRASLEQV.IVFLNLHRS..............GISEKH.RDMF.........SLYEKAV.........LRFTRNQTAAWRPMQ..QQ..QGQFPPSQIHQTpsQSQ.SGQVHVPQSLDSDQMNLRLMStnqnvacssvsaltasqtAMPSSLQTrpKMEAKDENNIKQ....HSNISPVQSSMFQQKQfH...PLP.........MQ....QQLLQ...REQQQQPPPTNKQlQ
  475-  605 (148.66/54.01)	...........................................MAKNEmSDVRMKqgVNIKAGLLQQ...HLSSSQRQLPKPL.....ASPAARMSNfsPSASSPQIQNYS..SPQlVDQQILPTTTQSGGSPFVAPS..................PVTSFAPS..PVPGGPEKPISV....ESPVSPPNQSQTAAQE.HslfTLPSEP...................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     244.17|      80|     103|     686|     768|       2
---------------------------------------------------------------------------
  686-  768 (124.59/105.77)	IQPLD.IASQADSYKQF....SSLESEVDSTASSGSKANMIEPGCalLQEINE.INGRLVETVVSICNED..VNYPnEVTSGTVVTCSYAP
  787-  874 (119.58/89.92)	IQPLRlLVPENYPYSPIliekSPFDASVHKYEDLSARARSRLSLC..MKELSEpMSLKEIAQAWDVCARAtmAEYA.ERHGGGTFSSKYGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.47|      20|      28|     612|     631|       5
---------------------------------------------------------------------------
  621-  649 (25.66/14.84)	SSPQSLAESVSdissvislaDMI.......AGSFHS
  652-  682 (19.81/ 9.78)	GARAGLAEDLS.....artkFRLqqgetnpTKRFKR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33077 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FRHVQSNNVQSRSSVNGTDTSHPAAQFQNQGQSLPTSLPYTHTSTSQQWLPQNMQSNLNNIHVSSGLPAQVPTTVSAAQNLNIQMSEGAHSNLLPGSQRPVQGRQQLLPHQPQSSSYMLQHQVDQ
2) LKEKIRHGNLRPPYMQQQQTSQDSTGKTANGSCGD
3) MEGNSNWKPNEQDGDSLANDWRSQHEPDLR
4) SQTAMPSSLQTRPKMEAKDENNIKQHSNISPVQSSMFQQKQFHPLPMQQQLLQREQQQQPPPTNKQLQMAKNEMSDVRMKQGVNIKAGLLQQHLSSSQRQLPKPLASPAARMSNFSPSASSPQIQNYSSPQLVDQQILPTTTQSGGSPFVAPSPVTSFAPSPVPGGPEKPISVESPVSPPNQSQTAAQEHSLFTLPSEPT
5) WRPMQQQQGQFPPSQIHQTPSQSQSGQVHVPQSLDSDQMNLRLMST
89
216
1
407
347
213
250
30
606
392










Molecular Recognition Features






MoRF SequenceStartStop




1) IDRLIK
611
616