<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33072

Description Uncharacterized protein
SequenceMEEKKPARALSEHLSLPHPPSPAVAVAINGKKKSKYVAFWALEKFIPEGFSDFKLLYVRPPVTYIPTPMGNAISITELRDDVVSAYKQEVDWNANEMLRPYKKMFERRKVRVEILVLESHEPVAAIAEEIAGTGVTKLVIGMSLRGFFSRKIDMSSMIATAVPRFCTVYVVSKGKLASVRPSDSDASGSIIFERTERSSSTSGSTDSPRVPSEYVDFLSFVSEAQSRVSPSLPAPKHSAVVHMDTSSSETDNSEVYGGRRMQIVNSGNEGKKNNNNNESFSASFPMGAEAYHAMSWASKWRDHEDRREIMSSSSSNNHELANMDWGAVVPENYSWVSNHASNMSDGLLSVHSVTDNQVNLSFEIEKLRAELKHVQEMYAMAQTETVDASKKLTELNQRRFEETEKLVELKEKEEVAKDTASKEKRRYEEAMKEAEKVKELMMKEALHRREAEIKAERDAKEKDKLQASLVSPGIQYQHYSWEEISAATSDFSEDLKIGIGAYGTVYKCNLHHTTGAVKVLHAGETQLSKQFDQELEILSKIRHPHLVLLLGACPERGCLVYEYMDNGSLDDRLMLVNDTPPIPWFERFRIALEVASALVFLHKSKPRPIIHRDLKPGNILLDHNFVSKLGDVGLSTMVNQDDASSKLTVFKKTSPVGTLCYIDPEYQRTGIISPKSDVYSLGVVILQLITAKPAIAITHMVEEAIGDDAEFMGLLDVKAGSWPISETRELAALGLCCTELRRRDRPDLKDQIIPALERLRKVVDKAQNSLSRTPSGPPSHFICPLLKGVMNEPCVAADGYTYDREAIEDWLREKDVSPVTNLPLPNKNLLANYTLYSAIMEWKSNK
Length846
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.07
Grand average of hydropathy-0.408
Instability index43.39
Isoelectric point6.09
Molecular weight94790.85
Publications
PubMed=23518688

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33072
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.49|      10|     218|      15|      24|       1
---------------------------------------------------------------------------
   15-   24 (21.21/10.99)	SLPHPPSPAV
  231-  240 (19.28/ 9.35)	SLPAPKHSAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.69|      28|      30|     428|     455|       3
---------------------------------------------------------------------------
  400-  423 (28.18/14.13)	...FEETEKLVELKEKEEV...AKDTAS.KE
  428-  455 (43.82/25.71)	EEAMKEAEKVKELMMKEAL...HRREAEIKA
  456-  486 (37.70/21.18)	ERDAKEKDKLQASLVSPGIqyqHYSWEEISA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.87|      15|     218|     330|     348|       4
---------------------------------------------------------------------------
  295-  315 (17.73/ 7.67)	SWASkwrDHEDRreiMSSSSS
  334-  348 (28.14/12.96)	SWVS...NHASN...MSDGLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33072 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SLPAPKHSAVVHMDTSSSETDNSEVYGGRRMQIVNSGNEGKKNNNNNESFSASF
231
284










Molecular Recognition Features






MoRF SequenceStartStop




NANANA