<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33070

Description Uncharacterized protein
SequenceMSNNPPQSSGPQQFRPMAPGPQGQHFVPAASQPFHHPFGHVPTNVQSQPPQFSQPIQQLFPVRPGQPGHITSSSQPVAAPYIQPQPNAPPMTGFGTSGPPFSSSYTFVPPSYGQQQPPSMVQPTSQMHAAGVPPAANSWAAPVNQSTTLVSPVQQTGQQTPVTLPTDPQGSLTPQSASDWQEHKSADGRKYYYNKQTKQSSWEKPLELMTPLERADASTVWKEFTTAEGRKYYYNKVTKESKWTIPEDLKLAREQAELASAKTSFSGAGSTPVSHMSASSSDLAVSTTVTSVVPSTSSTFPGHSSSPIPGGLPVPVTRPPPVAPVTPMSAATTDAEATAIKSDNIPSQGADDSNDGAPGQNNEAENKEMSVNGKANLTPTGDKANVEEPMVYATKQEAKAAFKSLLESVNVQSDWTWEQTTKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVKMLEECEELSSSMKWSKAMSLFENDERFKAVERQRDREDLFDNYIVELERKEREKAVEVHRQKMAEYRKFLETCDYIKASTQWRKIQDRLEDDERCSCLEKIDRLIGFEDYILDLEKEEEEMKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWSEYCIELKELPQYQAVASNTSGSTPKDLFEDVTEELEKQYHEDKSRVKDAMKSRKISMVSSWMFEDFKSAISEDLSTQPISEINLKLIYNDLVERMKEKEEKETRKLQRLAEEFTNLLRTFKDISAASNWEDVKQLVEESQEYRSIGDDSVSRGLFEEYITSLHEKAMEKERKRDEEKSRKEKEREEKEKRKDKDKERREKEREREKERGKERSSKREESDGEAVDVSEGHKDEKRKGKDRERKHRRRHHNSDEDVSSDRDDREESKKSSRKHGSDRKKSRKHANSPESDSESRHKRQKKEHRESSRRGGGNEELEDGEVGEDGEIKL
Length958
PositionUnknown
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-1.173
Instability index61.88
Isoelectric point6.14
Molecular weight109341.86
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33070
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.06|      40|      40|     177|     216|       1
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  151-  177 (44.02/20.56)	SP.VQ....QTG......QQTPVTLPTDPQGSLTP...QSA
  178-  217 (77.12/41.16)	SD.WQEHKSADGRKYYYNKQTKQSSWEKPLELMTPLERADA
  218-  257 (59.92/30.46)	STvWKEFTTAEGRKYYYNKVTKESKWTIPEDLKLAREQAE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     488.84|      65|      65|     464|     528|       2
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  397-  451 (59.51/28.81)	.............EAKA.AFKS..LLES.....V.NVQSDWTWEQTTKEIVHDKRYGALRTLGE...RKQAFNEYLGQ...RK...
  452-  524 (94.54/49.88)	K.VEaeerrrrqkKARE.EFVK..MLEE.....CEELSSSMKWSKAMSLFENDERFKAVERQRD...REDLFDNYIVEL.ERKERE
  525-  591 (86.29/44.92)	KAVE......vhrQKMA.EYRK..FLET.....CDYIKASTQWRKIQDRLEDDERCSCLEKI.D...RLIGFEDYILDL.EKEEEE
  593-  672 (68.44/34.18)	KRVEkehvrraerKNRD.AFRT..LLEE..hvaAGILTAKTYWSEYCIELKELPQYQAVASNTSgstPKDLFEDVTEEL.EKQYHE
  673-  735 (38.85/16.39)	DKSR....vkdamKSRKiSMVSswMFEDfksaiSEDLSTQPISEINLKLIYND....LVERMKE...KE............EKETR
  736-  799 (80.01/41.14)	KLQR.........LA.E.EFTN..LLRT.....FKDISAASNWEDVKQLVEESQEYRSIGDDSV...SRGLFEEYITSL.HEKAME
  800-  864 (61.20/29.83)	KERK.....rdeeKSRK.E..K..EREE.....KEKRKDKDKERREKEREREKERGK..ERSSK...REE.SDGEAVDVsEGHKDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     123.97|      16|      19|       6|      21|       3
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    6-   21 (33.84/15.27)	PQ...SSGP.......QQF.RPMAPGP
   28-   42 (22.19/ 7.71)	PA...ASQP.........FhHPFGHVP
   50-   66 (24.70/ 9.34)	PQ...FSQP......iQQL.FPVRPGQ
   68-   89 (20.25/ 6.46)	GHitsSSQP....vaaPYI.QPQPNAP
  302-  324 (22.99/ 8.23)	GH...SSSPipgglpvPVT.RPPPVAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.44|      17|      22|     870|     890|       4
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  870-  888 (27.15/14.97)	DRERKHRRRHHNSDEdvSS
  920-  936 (27.29/ 9.10)	DSESRHKRQKKEHRE..SS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.64|      14|      22|     108|     126|       5
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  108-  126 (22.05/24.33)	VPPSYGqqqppSMVQPTSQ
  132-  145 (26.59/14.19)	VPPAAN.....SWAAPVNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.99|      14|      30|     344|     358|       6
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  344-  358 (21.92/17.89)	NIPSQGaDDSNDGAP
  376-  389 (25.07/15.34)	NLTPTG.DKANVEEP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33070 with Med35 domain of Kingdom Viridiplantae
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