<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33068

Description Uncharacterized protein (Fragment)
SequenceMSARRVDNGIITAIAIDKDKNSQHALKWAVENIIVDSPHCVLLHVQQGNAGAHLQHDNQDDEHQFFLPFRGFCARKGIIAKEVILRNTDISNAIVTYITNNSVSNIVVGASAHNSFFKKFKSPDVSTTLLKTAPETCAVFVVSKGKLLKSKSASQPQKHTRQQDLSSLLYNYEHTSSVNSSDSERESSVSTKHNKPKSALSQSNSPRISPPPSLSEISQSETDNGSYGVVSTASSYTISESSNTNGSSISSTSTESPHAVNFVEQQNQNLEAEVRRLRLELKQFNPSKGKDTTNQNESLDEAIELPRALSEEKNKRHSAIQAAEIAKRLAKMESQKRRLLEMQAKLEKQRMANKVSYRRYSIKDVESATNGFSDALKIGEGGYGPVYKAVLDYTSVAIKILKSGITQGLKQFQQEIEVLSSMRHPNMVILLGACPEYGCLVYEYMENGTLEDRLFCKNNTPPLSWRARFRIASEIATGLLFLHHAKPEPLVHRDLKPANILLDRYFTSKISDVGLARLVPPSVADTFSNYHMTSAAGTFCYIDPEYQQTGLLGVKSDLYSFGVVLLQIITAMPAMGLGHKVEMAIENNNLREILDPTVSDWPEEETLELAKLALQCCELRKKDRPDLASVLLPALNRLKEFATEDNESIQDTTSPVSHTHNSAPLAPSPSSE
Length672
PositionTail
OrganismEutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Eutremeae> Eutrema.
Aromaticity0.06
Grand average of hydropathy-0.431
Instability index47.34
Isoelectric point6.87
Molecular weight74376.11
Publications
PubMed=23518688

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33068
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.21|      18|      21|     217|     236|       1
---------------------------------------------------------------------------
  217-  234 (31.76/22.49)	ISQSETDNG.SYGVVSTAS
  238-  256 (26.45/10.74)	ISESSNTNGsSISSTSTES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.04|      19|      21|     302|     322|       2
---------------------------------------------------------------------------
  304-  322 (30.97/25.80)	ELPRALS..EEKNKRHSAIQA
  324-  344 (25.07/12.23)	EIAKRLAkmESQKRRLLEMQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.13|      12|      20|     176|     187|       3
---------------------------------------------------------------------------
  176-  187 (19.78/ 8.60)	SSVNSSDSERES
  198-  209 (20.34/ 9.01)	SALSQSNSPRIS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33068 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATEDNESIQDTTSPVSHTHNSAPLAPSPSSE
2) EAEVRRLRLELKQFNPSKGKDTTNQNESLDEAIELPRALSEEKNKRH
3) SSVNSSDSERESSVSTKHNKPKSALSQSNSPRISPPPSLSEISQSETDNGSYGVVSTASSYTISESSNTNGSSISSTSTESPHAVNFVEQQNQN
642
271
176
672
317
269










Molecular Recognition Features






MoRF SequenceStartStop




NANANA