<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33058

Description Uncharacterized protein (Fragment)
SequenceKCVEQLSAQEHFNSSDTTEESRVGIEQSVQKFIDLARETEYFFLNKRLVLSTQKPEQVLKEDIQELKNEIERKEKLIDKHHERLQNWQNRLHKIPGNGGPQPGGAGHPQQPQGPPPPHPSMMHQQPPPQFTVPGPPGHPGPPGQQPFVLPPPPSSSYPLAYLKQNLSNIGMGERR
Length175
PositionHead
OrganismLottia gigantea (Giant owl limpet)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Patellogastropoda> Lottioidea> Lottiidae> Lottia.
Aromaticity0.06
Grand average of hydropathy-1.049
Instability index71.72
Isoelectric point7.27
Molecular weight19715.97
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33058
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.35|      27|      34|      91|     120|       1
---------------------------------------------------------------------------
   91-  120 (57.35/20.95)	LHKIPgngGPQ...PGGAGHP....QQP.QGPPPPHPS
  122-  156 (48.00/12.63)	MHQQP...PPQftvPGPPGHPgppgQQPfVLPPPPSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.90|      15|      15|      54|      68|       3
---------------------------------------------------------------------------
   54-   68 (23.39/15.57)	KPEQVLKEDIQELKN
   72-   86 (24.51/16.62)	RKEKLIDKHHERLQN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33058 with Med28 domain of Kingdom Metazoa
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