<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33057

Description Uncharacterized protein
SequenceMAAPTPMQIQQMQQQMSQMQQQMSQQQMTQQQMNQQQMNQQMNPHMNPQMNPQMSQQMQQQAHPQSQQQNQQQMQQQQVQAAAGQQQQQQQPQQQQQHSGDLDPIYKFKALLPRLKESLSNLFRAAGDVFKHHASQDSGNRTGDSPQQKFEKSLEEFYALCDQMEINLKFALEMHCQSLDSMKYTPHHVTSSIKDSQQPDTMPYPQYLLTVRTQINWAKEMHDVLSEFSKNLATDQIVAK
Length240
PositionTail
OrganismLottia gigantea (Giant owl limpet)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Patellogastropoda> Lottioidea> Lottiidae> Lottia.
Aromaticity0.05
Grand average of hydropathy-1.122
Instability index68.68
Isoelectric point6.28
Molecular weight27935.05
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33057
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     142.68|      36|      40|      25|      64|       2
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   25-   55 (58.35/15.47)	.....QQQM.TQQQMNQQQMNQQMNP.....HMNPQMNPQMS
   60-   79 (27.94/ 6.41)	QQAHP....qSQQQ.NQQQMQQQ............Q.V....
   80-  120 (56.39/12.93)	QAAAGQQQQ.QQQPQQQQQHSGDLDPiykfkALLPRLKESLS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.29|      32|      46|     132|     175|       3
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  132-  175 (44.02/48.67)	HHAS...QDSgnrtgDSPQ.QKFEKsleefYALCDQMEINlkFALEMH
  187-  222 (53.27/28.81)	HHVTssiKDS.....QQPDtMPYPQ.....YLLTVRTQIN..WAKEMH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33057 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MAAPTPMQIQQMQQQMSQMQQQMSQQQMTQQQMNQQQMNQQMNPHMNPQMNPQMSQQMQQQAHPQSQQQNQQQMQQQQVQAAAGQQQQQQQPQQQQQHSGDLDPIYKFKA
1
110










Molecular Recognition Features






MoRF SequenceStartStop




1) DLDPIYKFKALL
101
112