<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33055

Description Uncharacterized protein
SequenceMMECLDEILKKDIEQAFSNQIIFKEGDYGKKVETDTEKIKAFLQTVPSESLDFALQTLVKCIYLQRNKNRLQLLCKILESLVETNTISAKPVSDHLLAHEGLTYTDELHWKATFKTLRNIVGGVHYKEARDLLKIVLEKCQEKTTETAGAHATALNQIDESLKVIEYILDRNACLLPGYFAMNEISKVCLSTQTWPHWRLGRILSDYITSFEFAAQMVSICGRRELLPVVGHSIATNNVWRLNSYTLAFVLNGPLPYEKELTEPQTALMRYVLQQPYSREMASNMLGLNKQAKQRCEALENQLVDQVVMAIERCEEGHESGGENDQLLWQHLSSQLIYFVLFQFASFPHMVTSLYEKLKGKNLKKGRDNLMWVLLQFISGSIQKNSLADFLPVMKLYDLLYSDSEIIPIPDVTMAHCTHAFAGTCIWIHIDKKAQSDNVQLHRPIPLALRDHLQFLVQTLNMKNLVLNDFKVALLCNAYSTDTTRFSIPMGHLLECIYGNNKTTTLLPGNVVASAPIQPLSMSLLDSLTVHVKMSLIHSIVSKVMKLAKSKSHVALAPSLVKTYSRLLVYTEIESLGIKGFIGQLLPNVFSYNAIGIIHTLLEMFSYRMHHIQIHYRVQLLSYLNSMVNIQPANQNQLHLCVETTALRLITSMGSAEVQPHLSRISNEPKGILAGESEELNRVLVLTIARAMHITGADSFSTNWAKDILISVVQSTPLGWPQATLQCFPTSLSDFFNQTPVQREDKNVLKKTVETEYRKWKSMANENDIISLFSMQGKPPLFLCIIWKNLIEEKRVTPTAYKVLDRLGPRALATHLRTFVDFLVYEVSLQSQQVNRYVEAVNDMIWKCNIITIDRLILCLVLRNMDSKESTLRFVLTQLILLQGNDFKERVHEFVKDNSPEHWQSTNCHEKHMNFHRTYPEKFYFEGIQDMNSPIQHQYLPVYFGNVCLRFLPVLDVLIHRMIENTAVHKVLENILEQIGCLFKFHDRPITYLYNTYYYYEKLLADRPALKRKLLQTVIGAFSEIRPKNWCISESYLTYLGGGMDDMEWKPDAEYYLQIAKRLSDTLTGVSPAPFPDCDWRFNEFPNPAAHALYVSCVELMALPVSSQIVGAGLLDIVLKSSTKIPRNVIMSWMNAVGLIITSLPESCWWPVLSDRIIKTLQGKELLSLTAQSSYKLFEKLNFKKCYDTYSENESSTLLCLCHAIWHHAGIGQLSLLPNFLKDKVKPIAKREEQLIYVCHLVGPFLQRLHAERTRSLLDLTVELYQILLNVDKACERLQFMDPISDFLYHIKYMFVGDGVKSETENVIRNLSPSLQLRLRFISHIINAEQENKFV
Length1335
PositionTail
OrganismLottia gigantea (Giant owl limpet)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Patellogastropoda> Lottioidea> Lottiidae> Lottia.
Aromaticity0.09
Grand average of hydropathy-0.066
Instability index41.99
Isoelectric point7.39
Molecular weight152977.97
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33055
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.96|      31|      57|     785|     820|       1
---------------------------------------------------------------------------
  785-  820 (40.63/45.26)	IIWK.NLIEEKRVTPTAykVLDRLGPRAlaTHLRtFV
  844-  875 (50.33/34.19)	MIWKcNIITIDRLILCL..VLRNMDSKE..STLR.FV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     346.02|     120|     415|      37|     220|       2
---------------------------------------------------------------------------
   37-  181 (161.30/187.07)	EKIKAFLQTVPSESL...DF..................ALQTLVKCIYLQRNKNRLqllckILESLVETNTIsaKPVSDHLLahegltytDELHWKATFKTLRNIVGGVhYKEARDLLKIVLEKCQEKTTetagAHATALNQIdESLKVIEYIldrnACLLPGYFA
  451-  591 (184.72/133.67)	DHLQFLVQTLNMKNLvlnDFkvallcnaystdttrfsiPMGHLLECIYGNNKTTTL.....LPGNVVASAPI..QPLSMSLL........DSLTVHVKMSLIHSIVSKV.MKLAKSKSHVALAPSLVKTY....SRLLVYTEI.ESLGIKGFI....GQLLPNVFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     276.32|      87|     414|     693|     784|       3
---------------------------------------------------------------------------
  693-  784 (136.09/109.47)	HITGA...D...SFSTNWAKDILISVVQSTPLGWPQATLQCFPTSLSDFFNQTpVQreDKNVLKKTVETEYRKWKSMaNENDIISLFSmQGKPPLFLC
 1108- 1200 (140.23/92.45)	QIVGAgllDivlKSSTKIPRNVIMSWMNAVGLIITSLPESCWWPVLSDRIIKT.LQ..GKELLSLTAQSSYKLFEKL.NFKKCYDTYS.ENESSTLLC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.01|      14|      40|     316|     329|       4
---------------------------------------------------------------------------
  316-  329 (26.22/17.71)	EGHESGGENDQLLW
  359-  372 (25.79/17.30)	KGKNLKKGRDNLMW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.17|      20|      94|     925|     945|       7
---------------------------------------------------------------------------
  925-  945 (34.86/21.21)	FEGIQDMNSPIQHQYLpVYFG
 1022- 1041 (39.31/19.53)	FSEIRPKNWCISESYL.TYLG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33055 with Med23 domain of Kingdom Metazoa
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