<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33049

Description Uncharacterized protein
SequenceMEIKMEAIGSGGNKETEPILGLVSEIRRTLMRAWTERWSEVQFGVQLKRILASHSDEDVDLAEILLQLALVGSSPKSLLLDYLKHIVLSQVVPHSVMFKHISTYDDLSKPYCIMALIDLAETFATKISFSYGMDSSLQMCKSLLMLVHWLLNHVYRCLQKTQEGKSTPEIPSIIDRASSAIQKTVDKKTVCTLLQIARAETADKYREFEQCEVNVRGTLSQLSQSTGILPSTTVEKVSDMLTSLAQLQDMTLPCEHEEGPLKLKLSSTVNTLVGLEAVLNATNQLQPFVDQTLVLARLTSFEKLSWPELYVEIFRACFMGVIDTPNDSHEELKWASFTFLKIPQIIQKLQVHTIGRDVTVDLEQSFELLLNYPNLLDLADAKQKCDSVEQLIQGCIKLNLLSDRHKQRIMQKRDNERGRALERSSSQTNSIVILRAEATVLSILKVETLDTDYQKSQEPLLSVLCQMTSGKSFEIILAAAASMGELQNFSIKLIKVNEFARHSTGEGGKASQTRASLFDVTFLMLCHIVQHYGLETLQSRHKLCHIVQHYGLDVISVIVQHYGLETLTSNHKDTSETFFVQWAQRWFPEEGKYKNIENCSPLDQNKVEPLMKLFLTSGELRTSLTRWHEVCLNTPFAIQEILFAWEHGAINIDQVKTVLDNVKSWMCCLPVVVSCWLCCYINTADYDRRIKPLFMLEQLMTITNQAESTQLNDRYQFMKTVIELLSQEVLPANHTYRNISKQYIPANEPPAIIFKQTLHNIFSKGWVNLKSLHTLEQVLNLCGCDWFCDQIVNHMLETNKTDELCTAVSLVFALFHMDLENLTLSLLVKTLPSILHSADRTHLMIDPRGYTLARLAVLCITASNVNRGGQKEPYVRVGRKRSRIEVDIEDIDDSEARPSKIRKISEPQLTLHSEDFTFDDLNTREDGEVIPTFDTKEPLNKALVNLFRLMNASIHDQRVTTRTSFIRSFIEETLRCGPQYYRFILQFMPANMLAQLMKTMPGIFQNEQIIHICDLSTLGGRKLAAKAVCHNSYLKVCS
Length1038
PositionTail
OrganismLottia gigantea (Giant owl limpet)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Patellogastropoda> Lottioidea> Lottiidae> Lottia.
Aromaticity0.07
Grand average of hydropathy-0.115
Instability index45.77
Isoelectric point6.15
Molecular weight118099.12
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33049
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     683.09|     231|     576|      13|     289|       1
---------------------------------------------------------------------------
   13-  289 (348.20/306.77)	NKeTEPILGLV...SEIRRTLmrawtERWSEV....QFGVQlkrilashsdedvdlaEILL..........QLALVgsspksllLDYLKH.IVLSQVVPHSVMFKHIST..YDDLSKPYC....IMALIDLAEtfatkisfSYGMDSSLQMCKSLL.MLVHWLL..NHVYRCLQKTQEGKSTPeiPSIIDRAS..SAIQKT.VDKKTVCTLLQIARAETADKYrefeqCEVNVRGTLSQLSQSTGILPSTTVEKVSDM.LTSLA.QLQDMTLPC.EHEEGPLKLKLSSTVNTLVGLeAVL..NATN.....QLQPFV
  605-  875 (334.89/210.92)	NK.VEPLMKLFltsGELRTSL.....TRWHEVclntPFAIQ................EILFawehgainidQVKTV........LDNVKSwMCCLPVVVSCWLCCYINTadYDRRIKPLFmleqLMTITNQAE........STQLNDRYQFMKTVIeLLSQEVLpaNHTYRNISKQYIPANEP..PAIIFKQTlhNIFSKGwVNLKSLHTLEQVLNLCGCDWF.....CDQIVNHMLETNKTDELCTAVSLVFALFHMdLENLTlSLLVKTLPSiLHSADRTHLMIDPRGYTLARL.AVLciTASNvnrggQKEPYV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     118.54|      26|      27|     517|     542|       2
---------------------------------------------------------------------------
  489-  515 (24.80/12.95)	..FSIKLIKVNEFARHStgeGGKASQTRA
  516-  541 (50.81/34.39)	SLFDVTFLMLCHIVQHY...GLETLQSRH
  542-  556 (24.11/12.38)	KL........CHIVQHY...GLDVIS...
  558-  571 (18.82/ 8.03)	............IVQHY...GLETLTSNH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33049 with Med24 domain of Kingdom Metazoa
Unable to open file!