<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33040

Description Uncharacterized protein
SequenceMVVSSVYDVVFVVEDTANLAAYIDILKSNYVMPTLQYFNGGPPDSIDYGHDYSCSLYVLVTYNSGDIMSSLSANCTRPTTSIHEFSTWLDNTKFLGGAGQSSSLLSEGLSTALQVFDDIKARRNESISSQKHCILLCNSPPFHLSSQESYNYSGFYSNQLAAKMAKRGVNLSIISPRKIAALQELFEESSSPDLHSSTMKDFTVDPRHMVLLRGYELEERSHSPSLEDEKQTSDLIKSSLASANVNMGNKVQSPAAAMDGGSFKHPGQTMNNPNQSINPISMNSQQPSPGAQLSPLNVQNQPSPQMAQQVNNPKKDQQNIIMPGQRTNLGGNMNTLRPQNIITSQQQSIPQQIINQSVSSSTNNPNISSIPPHTTGNMISTQQPPMSLPSNQTQGIMNQVGNQQQFVQQSQQQQKQPNTINAGPSSAPNPTGMPGFPNNPGEKRVIWRGVLDYQEKPQKISRSLSCNVTLGPSDPDVNASNWPSKLLMQLLPQNMLCELTSLFKNSRQVSFNFNPSDMDILKSLHKIMGNGFAGCVHFPSTSHCDVRVLLLLYSSKKKAFIGLIPNDQVAFVQGIRTVLSKHKERSQVRQAMMSQSFSVQQSLSTPPQMQQQQQQQQQQQQGGGASVGGVGQGVSGVGTTGVVGPAVSGVGQTVGNVSTGVGLGPNNPMTSTPNMTLMSGQMQNQIPSTMSGPVSTTAQGPGQPQSMAQLTSNVQQQQQLLQQVASAQQPLGSGQPQDGSNVAMLQQQIQALQQELQGAKQEQAKMAAARQQQKLMAHRQQLQQQQIQQRQLQLQQQQQQQQHQASNQQQLRHLLLNQQHMRQQQQIMMQRGAAPPQQPGVIPTDGQQNIQMQQQNPSQNFISDFNLPDNF
Length871
PositionUnknown
OrganismLottia gigantea (Giant owl limpet)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Patellogastropoda> Lottioidea> Lottiidae> Lottia.
Aromaticity0.05
Grand average of hydropathy-0.605
Instability index62.23
Isoelectric point8.83
Molecular weight95212.75
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33040
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.24|      13|      17|     629|     645|       1
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  629-  642 (19.30/ 7.59)	GVGQGVSGVGTtGV
  649-  661 (22.94/10.54)	GVGQTVGNVST.GV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     540.43|      95|      98|     266|     361|       4
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  124-  186 (80.93/23.55)	NESISSQkhCILL.C....NSP........P......FHLSSQ.E...SYNYSGF.YSNQLAAKMAKR.........................................GVNLSIISPRKI........AALQELF
  266-  354 (150.63/53.15)	.........PGQT.M....NNPN.QS..INP......ISMNSQ.QPSPGAQLSPLNVQNQPSPQMAQQVNNPK...........KDQQNIIM.........PG.QRTNlGGNMNTLRPQNIITSQQ..QSIPQQII
  355-  420 (82.84/24.29)	NQSVSSS...........tNNPNiSS..IPPhttgnmIS..TQ.QP.......PMSL...PSNQ.TQGIMNQV...........GNQQ..............................QFVQQSQQ..QQKQPNTI
  421-  496 (80.43/23.36)	NAGPSSA..PNPTgMpgfpNNPG.EKrvIWR......GVLDYQeKPQKISRSLSCNVTLGPSDPDVNASNWPS...........K....LLM.........Q.............LLPQNML..............
  691-  762 (99.61/30.84)	.SGPVST..TAQ........GPG.....................QPQSMAQLTS.NVQQQ..QQLLQQVASA...............QQPLG.........SG.QPQD.GSNVAML.QQQIQALQQelQGAKQE..
  794-  862 (45.98/ 9.91)	........................................................LQQQQQQQQHQASNQQQlrhlllnqqhmRQQQQIMMqrgaappqqPGvIPTD.GQ.......QNIQM.QQ..QNPSQNFI
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.51|      23|      25|     515|     539|       5
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  515-  539 (37.47/30.92)	PSDMDILKSLHKIMGNGFAGCVhfP
  543-  565 (39.04/24.55)	HCDVRVLLLLYSSKKKAFIGLI..P
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33040 with Med25 domain of Kingdom Metazoa
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