<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33016

Description Uncharacterized protein
SequenceMATDFWASSHYQRWIVDRATLRQARADDLLYVDNPEQLDFLNIYFANVISKLGKKLQLRQRVIATATVFFRRFYLKSSYCETDPFLVIAACCYVAAKAEESPVHIKNVVSESRTLFSHQYGIKNFPSDNSKLAEMEFYLVDDLDCDLVVFHPYRTLLALCRKESGAGDTPHEAEAGEVGVGISGDEGPRYWGSDGEKLELSDGALQTAWFIINDTYRSELCLLYPPHLIAIAAIYLTFILHVPTQATIAHLLPSRSASDASPPPPLTEEPSQIQPRRSSRQHSVEAKKQQDPISFLAGLNVSMPHIATIAQEIVSLYCLWDRYKEDSSPDAGSSTKQRLRGSGSGSNSGSVSRAPSEDDGSSVSSGGGESESVVTQAVLTKLLMKMREQRLADLAHPANGKPVAVNKMLERTQAAG
Length416
PositionKinase
OrganismMoniliophthora roreri (strain MCA 2997) (Cocoa frosty pod rot fungus) (Crinipellis roreri)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Marasmiaceae> Moniliophthora.
Aromaticity0.08
Grand average of hydropathy-0.273
Instability index51.77
Isoelectric point5.81
Molecular weight45875.24
Publications
PubMed=24571091

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33016
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.65|      40|     139|      53|      93|       2
---------------------------------------------------------------------------
   53-   93 (68.29/51.01)	GKKLQLRQRVIATATVFFRRFYlKSSYCET.DPFLVIAACCY
  195-  235 (66.36/44.91)	GEKLELSDGALQTAWFIINDTY.RSELCLLyPPHLIAIAAIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.16|      21|     129|     242|     262|       3
---------------------------------------------------------------------------
  242-  262 (37.31/22.66)	VPTQATIAHLL....PSRSASDASP
  373-  397 (29.85/16.90)	VVTQAVLTKLLmkmrEQRLADLAHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.37|      15|      15|     330|     344|       4
---------------------------------------------------------------------------
  330-  344 (24.93/14.66)	DAGSSTKQRLRGSGS
  347-  361 (25.44/15.11)	NSGSVSRAPSEDDGS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33016 with CycC domain of Kingdom Fungi
Unable to open file!