<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32999

Description Cell differentiation protein rcd1
SequenceMMPNAHLYGGHHQQYTPQDSAWMHPHQQQQAAVAAAQQQQQQQQQQQQQQQQQYSHIANRQHGAAGALGGVGVNAGVGAGAVAPGVGHGGPDGALDGVSEDNRRTMSYIADLLNENTREAALLELSKKREQVPELALILWHSFGVMTSLIQEIISVYSLLNPSQLTAAASNRVCNALALLQCVASHNDTRTLFLSAHIPLFLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDSSEVINFLLTTEIIPLCLRIMETGSELSKTVAIFIVQKILLDDNGLNYICATYERFYAVGTVLSNMVGQLVEQQTARLLKHVVRCFLRLSDNARAREALRQCLPEPLRDATFSSVLRDDAATKRCLAQLLINLSDNIVDAGSGHPSI
Length380
PositionTail
OrganismSporothrix schenckii (strain ATCC 58251 / de Perez 2211183) (Rose-picker's disease fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Ophiostomatales> Ophiostomataceae> Sporothrix.
Aromaticity0.06
Grand average of hydropathy-0.092
Instability index48.89
Isoelectric point6.49
Molecular weight41584.85
Publications
PubMed=24855299

Function

Annotated function 
GO - Cellular Component
CCR4-NOT complex	GO:0030014	IEA:InterPro

GO - Biological Function
GO - Biological Process
mRNA catabolic process	GO:0006402	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32999
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.10|      22|      22|      13|      34|       1
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   13-   34 (41.52/24.67)	QQYTPQDSAWMHPHQQQQAAVA
   37-   58 (39.58/23.20)	QQQQQQQQQQQQQQQQQYSHIA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     284.74|      95|     114|     159|     258|       2
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  159-  258 (147.69/101.61)	LLNPSQLT..AAASNRVCNALALL.QCVASHNDTRTLFLSAHIplfLYPFLNTTSKSRPFEYLRL...TSL..GVIGALVKNDSSEviNFLLTTEIIPLCLRIMETGS
  273-  375 (137.05/82.05)	LLDDNGLNyiCATYERFYAVGTVLsNMVGQLVEQQTARLLKHV...VRCFLRLSDNARAREALRQclpEPLrdATFSSVLRDDAAT..KRCLAQLLINLSDNIVDAGS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32999 with Med15 domain of Kingdom Fungi
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