<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32990

Description Uncharacterized protein
SequenceMLTMETKSQNTIPTGNGNKPLDPGASHSMPPQVHNQGQSLPISLSSNQPQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSSLTQTIANTVGQNANMQSISGVSQNPVGNLMGQGIPSNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQIQQQLLKQKLQQGNHPHSLVQSHIHHQQQQQNLLQPNQLQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMHQQHPQSVLRQQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSNTTNMSQNQLIGQQNIVGDLQQQQQRLLGQQNNLQNLQQQQQQLMAQQNNLSSMHQQQLGPQSNVTGLQQQQLLGAQPGNSSMQSNQHSLHMLQQPKVTLQQQAQQSGSALLPNQGQQSHSQLPQQQLMAQIQSQPGQLQQQSNPLQRDLQQRLQASGSLLQQPNVIDQQKQLYQPQRALPETSSTSLDSTAEIGHANGADWQEEIYQKIKVMKETYLPEINEMYQRIATKLQQHDPLPQQPKSEQLEKLKVFKVMLERLITFLQVSKNNITPNFKEKLGFYEKQIVGFLNPSRYRKPIPNLQQGQPPQPRIQPMQQPQSQVPQLQSHENQLIPQLQSMNTQGSVPQMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTKVNTLSTQSGGSMLQPNIPLQSNSNMIQHQHLKQQQQQQHEQQMLQTQQLKRFQQHQNLMQNQQMQQQQLHQQAPSPMPGDSDKPVSGISSLLDTGNIVHQPSVAQALAPSLAIGTPGISASPLLAEFTSPDGAHGGALTTVSGKSNVTEQSLECLIKAVKSLSPKALSASVGDIGSVVSMIDRIAGSAAGNGSRAAAGEDLVAMTGCHLLSFLSFLFFTCFSQDGNSRE
Length920
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.02
Grand average of hydropathy-0.778
Instability index73.32
Isoelectric point9.14
Molecular weight101264.17
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32990
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     516.35|      74|      75|      94|     167|       4
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    1-   61 (66.95/ 9.03)	....ML.TME......TKSQNtiPTGN..GNK.P....LD.............PGASHSMPPQVHNQ........GQSLPISLSSNQPQaRQQ..LSQN.MQN
   94-  167 (133.51/26.04)	QNANMQ.SIS......GVSQN..PVGNLMGQGIP....SNM....FVNSQRQMPGRQQVVPPQQQQQ........SQNPQQYLYQQQIQ.QQL..LKQK.LQQ
  355-  417 (95.07/16.21)	GNSSMQ.SN..........QH..SL.HMLQQ..P.....KV....TLQQQAQQSGSALLPNQGQQSH........SQLPQQQLMA.QIQ.SQ....PGQ.LQQ
  418-  496 (67.11/ 9.07)	QSNPLQ.RDL......QQRLQ..ASGSLLQQ..P....N......VIDQQKQLYQPQRALPETSSTSldstaeigHANGAD..WQEEIY.QKIkvMKETyLPE
  613-  673 (73.30/10.65)	QSMNTQgSVP......QMQQN..NMSSLLH.................NSLSTLSG.....DSTSQSN........MMNPIQPGSNLDSG.QGN..ALSS.LQQ
  681-  763 (80.42/12.47)	QN..LV.SISqptkvnTLSTQ..SGGSMLQPNIPlqsnSNMiqhqHLKQQQQQQHEQQMLQTQQLKR........FQQHQNLMQNQQMQ.QQQ..LHQQ....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.78|      23|      24|     189|     212|       6
---------------------------------------------------------------------------
  189-  211 (39.93/10.31)	LQPNQLQSGLQTSTVMQPSMMQT
  215-  237 (46.41/14.81)	LQQNQPSSVQQSTQPMHQQHPQS
  578-  596 (39.44/10.03)	LQQGQPP..QPRIQPMQQ..PQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.78|      20|      31|     500|     530|       7
---------------------------------------------------------------------------
  500-  519 (36.32/13.10)	MYQRIATKLQ.QHDPLPQQPK
  532-  552 (28.46/24.52)	MLERLITFLQvSKNNITPNFK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32990 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKQKLQQGNHPHSLVQSHIHHQQQQQNLLQPNQLQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMHQQHPQSVLRQQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSNTTNMSQNQLIGQQNI
2) MLTMETKSQNTIPTGNGNKPLDPGASHSMPPQVHNQGQSLPISLSSNQPQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSSLTQTIANTVGQNANMQSISGVSQNPVGNLMGQGIPSNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQ
3) QQQQQRLLGQQNNLQNLQQQQQQLMAQQNNLSSMHQQQLGPQSNVTGLQQQQLLGAQPGNSSMQSNQHSLHMLQQPKVTLQQQAQQSGSALLPNQGQQSHSQLPQQQLMAQIQSQPGQLQQQSNPLQRDLQQRLQ
4) YRKPIPNLQQGQPPQPRIQPMQQPQSQVPQLQSHENQLIPQLQSMNTQGSVPQMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTKVNTLSTQSGGSMLQPNIPLQSNSNMIQHQHLKQQQQQQHEQQMLQTQQLKRFQQHQNLMQNQQMQQQQLHQQAPSPMPGDSDKPVSGISSLL
161
1
297
571
292
149
431
783










Molecular Recognition Features






MoRF SequenceStartStop




1) RYRKPI
570
575