<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32952

Description Uncharacterized protein
SequenceMSQLSTKQKLLNIIDDIELIAKELIENAIAPKANKISGQEYAQLTELLVAKDTELKDTLKLAYEQGQINKKIEVVKAEVEKQDQEISKLQKQLKEAEQILSTAIYQANQKLQSIALAKKRPVSSEELIKFAHRISASNAVCAPLTWQQGDPRRPYPTDIEMRLGTLGRLSDPVNGHILQQQSSMSDLHRSGPAGEVPASNQNQFAWHPSGEIHISVGQGTVAMDTRNHKQETEDVEVMSTDSSSSSSTKKCCLNMDSDNQSQEAKLSVGLEEFNFDIVPVIYEIFCSIEKDHHDNSAKTRESQDCSQKVLELQKRLDQARAEVNLLPGIQFSKEEQLNHLEALKTQLRLKQDLLQRHRFVSPFHKPYVGISKYLIKVLEILDTETSEEICFLLTTRTYFPINLLFSHCSTMPTIGIKRDLLFQALGKTYTDDEFQKVCFEFGLELDEVTTEKQMLTKEQGDSQLSAGLSEDVIYRVDIPANRYDLLCLEGLVLGLKIFQGIIPPPQYKVIKLTDGSVEKLVVKPDTEKIRPFVVAAILRNLSFTQDSYNSFIDLQDKLHQNICRKRSLVAIGTHDYDTIKGPFIYDAKPPSDIKFVPLNQTKEFTAADLMTLYSTHAQLKQYLSIIKDSPVYPVIFDSNGVVLSLPPIINGNHSKITLETKNVFIECTATDLTKAKIVLDTIVCMFSEYCSEKYTSEYVEVVYPNGTTEMCPELGYRTEVISVHRANKLIGISESSTNITNLLSKMCLKSELQSDSKNIKVTVPPTRHDVIHACDIYEDVAIAYGYNNITRTLPNTNTIGEQLPINKLSDLLRYPIAEAGFTEALTFALCSRDDISTKLGIDSIDKVPAVHISNPKTLEFQVCRTTLLPGILKTIAANKKMPLPLKIFEVADVVLKDAQTDVHQRMYKGRLLGKPWFTEDLFDLTRKRQRFYFKYKKTGLERDYKRYKEFRHLVAKSVIVAKRDYCQRMTDDDYKKVGARNERRICAVNCNKNAGFEVVHGLLDRIMLLLEVPWSQARSNIGYYLAATNGKAC
Length1033
PositionMiddle
OrganismDendroctonus ponderosae (Mountain pine beetle)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Coleoptera> Polyphaga> Cucujiformia> Curculionidae> Scolytinae> Dendroctonus.
Aromaticity0.07
Grand average of hydropathy-0.326
Instability index48.69
Isoelectric point6.67
Molecular weight116859.75
Publications
PubMed=23537049

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IEA:InterPro
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
magnesium ion binding	GO:0000287	IEA:InterPro
phenylalanine-tRNA ligase activity	GO:0004826	IEA:UniProtKB-EC
RNA binding	GO:0003723	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
phenylalanyl-tRNA aminoacylation	GO:0006432	IEA:InterPro
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32952
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.32|      36|     136|     830|     867|       1
---------------------------------------------------------------------------
  830-  867 (57.59/47.28)	CSR..DDISTKLGIDSIDKVPAVHISnpKTLEFQVCRTTL
  966- 1003 (60.73/42.18)	CQRmtDDDYKKVGARNERRICAVNCN..KNAGFEVVHGLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     337.99|     117|     136|     288|     423|       2
---------------------------------------------------------------------------
  288-  423 (170.48/176.67)	IEKDHHDnsaktresqDCSQKV.LELQKRLDQARAEVNLLpgiqfSKEEQLNHLEA.LKTQL..RL.....KQDLLQRHRFVSPFhKPYVGI...SKYliKVLEILDTeTSEEICFLLTTRTYFPI.......NLLFSHCSTMPTIGIKrDLLFQ
  425-  560 (167.51/122.25)	LGKTYTD.........DEFQKVcFEFGLELDEVTTEKQML.....TKEQGDSQLSAgLSEDViyRVdipanRYDLLCLEGLVLGL.KIFQGIippPQY..KVIKLTDG.SVEKLVVKPDTEKIRPFvvaailrNLSFTQDSYNSFIDLQ.DKLHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.72|       9|     348|     221|     254|       4
---------------------------------------------------------------------------
  223-  231 (18.20/14.71)	MDTRNHKQE
  255-  263 (17.52/17.15)	MDSDNQSQE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32952 with Med4 domain of Kingdom Metazoa
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