<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32951

Description Uncharacterized protein
SequenceMSQLSTKQKLLNIIDDIELIAKELIENAIAPKANKISGQEYAQLTELLVAKDTELKDTLKLAYEQGQINKKIEVVKAEVEKQDQEISKLQKQLKEAEQILSTAIYQANQKLQSIALAKKRPVSSEELIKFAHRISASNAVCAPLTWQQGDPRRPYPTDIEMRLGTLGRLSDPVNGHILQQQSSMSDLHRSGPAGEVPASNQNQFAWHPSGEIHISVGQGTVAMDTRNHKQETEDVEVMSTDSSSSSSTKKCCLNMDSDNQSQEAKLSVGLEEFNFDIVPVIYEIFCSIEKDHHDNSAKTRESQDCSQKVLELQKRLDQARAEVNLLPGIQFSKEEQLNHLEALKTQLRLKQDLLQRHPDDEFQKVCFEFGLELDEVTTEKQMLTKEQGDSQLSAGLSEDVIYRVDIPANRYDLLCLEGLVLGLKIFQGIIPPPQYKVIKLTDGSVEKLVVKPDTEKIRPFVVAAILRNLSFTQDSYNSFIDLQDKLHQNICRKRSLVAIGTHDYDTIKGPFIYDAKPPSDIKFVPLNQTKEFTAADLMTLYSTHAQLKQYLSIIKDSPVYPVIFDSNGVVLSLPPIINGNHSKITLETKNVFIECTATDLTKAKIVLDTIVCMFSEYCSEKYTSEYVEVVYPNGTTEMCPELGYRTEVISVHRANKLIGISESSTNITNLLSKMCLKSELQSDSKNIKVTVPPTRHDVIHACDIYEDVAIAYGYNNITRTLPNTNTIGEQLPINKLSDLLRYPIAEAGFTEALTFALCSRDDISTKLGIDSIDKVPAVHISNPKTLEFQVCRTTLLPGILKTIAANKKMPLPLKIFEVADVVLKDAQTEVGARNERRICAVNCNKNAGFEVVHGLLDRIMLLLEVPWSQARSNIGYYLAATNGKAC
Length886
PositionMiddle
OrganismDendroctonus ponderosae (Mountain pine beetle)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Coleoptera> Polyphaga> Cucujiformia> Curculionidae> Scolytinae> Dendroctonus.
Aromaticity0.06
Grand average of hydropathy-0.297
Instability index50.94
Isoelectric point5.65
Molecular weight99056.12
Publications
PubMed=23537049

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IEA:InterPro
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
magnesium ion binding	GO:0000287	IEA:InterPro
phenylalanine-tRNA ligase activity	GO:0004826	IEA:UniProtKB-EC
RNA binding	GO:0003723	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
phenylalanyl-tRNA aminoacylation	GO:0006432	IEA:InterPro
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32951
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.73|      25|      32|     330|     361|       1
---------------------------------------------------------------------------
  331-  359 (33.93/34.79)	FSK...EEQLnHLEALKTQlrlKQDLLQRHPD
  362-  389 (37.80/15.33)	FQKvcfEFGL.ELDEVTTE...KQMLTKEQGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.54|      17|      32|     215|     231|       2
---------------------------------------------------------------------------
  215-  231 (29.90/17.83)	SVGQGTVAMDTRNHKQE
  247-  263 (31.64/19.25)	STKKCCLNMDSDNQSQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     266.96|      89|     116|     631|     725|       3
---------------------------------------------------------------------------
  631-  725 (140.29/100.55)	YP...NGTTE.....MCPELGYRTEvISVHRANKLIGISESstNITNLLSKMC....LKSELQSDSKNIKVTVPptrHDVIHACD.IYEDVAIAYGYNNITRTLP.NTN
  742-  844 (126.67/75.36)	YPiaeAGFTEaltfaLCSRDDISTK.LGIDSIDKVPAVHIS..NPKTLEFQVCrttlLPGILKTIAANKKMPLP...LKIFEVADvVLKDAQTEVGARNERRICAvNCN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.82|      46|     126|     412|     457|       4
---------------------------------------------------------------------------
  412-  457 (79.12/55.64)	DLLCLEGLVLGLKIFQGII.PPPQYKVIKLTDGSVEKL..VVKPDTEKI
  536-  584 (70.69/48.89)	DLMTLYSTHAQLKQYLSIIkDSPVYPVIFDSNGVVLSLppIINGNHSKI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32951 with Med4 domain of Kingdom Metazoa
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