<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32950

Description Uncharacterized protein
SequenceMVMEKTTSKTSSLQALLLRAWRERWTDLQWGINIKTVLPRGVSGDVYNLADCILQQAVVGDGANQLVLSYLRHSLSAQLVSHAAVLQRLSKYSQFGKVHCITSLLEFLEGMLSGVTCFGKPEETVLATAVLSIALWLLNILHNCSEAAGLIQKASELLKILLTDDFYISMICLAKYNDPELFQETSAKCTEVLSRLPEADEVTKYVAKLEHIDIHMLCLPVNSEKWPGSLVQCWLEVNLMKKPDMDASSLADQLQIFQRLKGFSDSRLFAELLRGSLLCFYNTNESPHDSRWEAITFLKVPHIIQELAAKSDSASVVNAIELILQNVFPYSGGKIVKWWRAKKQISRNSHGPLLDLLDAKCSYSSLKYLLEELVKLRLISEPQAGHLLEIRKQSTSLKLDNGDRSKPRVVVCAETTFSGIINSLSTTEYHKVQEGMLGMFQQMLIAKNFQLILAAACSLGQLKTLVKRLIRFNECFNFLSQDKARIEQFDISFVMLVSIVQNFGVEVLDTDDESLIYEWVNECLVDRHMQKSPTQLLQISDPVIVEALIKQFNSCEGDFKPNLKHKNVLFNMPGVMHEVLVAWEQGALHPSDVKRILDAVRGKMCCLAIAGATYLCSYMRTVPQENLLKPKNMVQQLLQVPPIIPNPTAEEASLRDRWELTSEIIRKIERDIQLPTTKSSSNLMSRSPATECLHSTWNSAITNGWLDYDSARILHCLLDTAGPKWLVNAVIHELLKLRFREQLQRAVDLALAIFHVDIVACTTELLSHILPQLLFVDVQSFRLVEPQLSFLACLTSYCIYTAWDSVANERDDEPPMKMLRFENVEEPVTPAKKLIRSLLQLFSTFEKMEGGITPQTYFVYNLIKSLVEVKIQSANAILAYISPSLISGLLKTLPDLFSFPLLLHLHDVCTTTGRVNMAKDLCVLRNYQLKKCLRSY
Length936
PositionTail
OrganismDendroctonus ponderosae (Mountain pine beetle)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Coleoptera> Polyphaga> Cucujiformia> Curculionidae> Scolytinae> Dendroctonus.
Aromaticity0.08
Grand average of hydropathy0.054
Instability index49.02
Isoelectric point6.64
Molecular weight105771.05
Publications
PubMed=23537049

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32950
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     164.73|      44|      45|     156|     200|       1
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  144-  188 (65.90/40.65)	CS.EA.AGLIQKAS.....ELLKI...........LLT.DDFYISMICLAkYNDPELFQETSAK
  189-  232 (67.97/38.08)	CT.EV.LSRLPEAD.....EVTKY...........VAKlEHIDIHMLCLP..VNSEKWPGSLVQ
  233-  285 (30.86/13.68)	CWlEVnLMKKPDMDasslaDQLQIfqrlkgfsdsrLFA.ELLRGSLLCF..YNTNE........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.40|      11|      18|     705|     718|       2
---------------------------------------------------------------------------
  705-  718 (16.26/18.69)	WLdydSARILHCLL
  725-  735 (20.14/11.28)	WL...VNAVIHELL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.76|      20|      22|     821|     840|       3
---------------------------------------------------------------------------
  821-  840 (34.75/22.71)	FENVEEPVTPAK....KLIRSLLQ
  845-  868 (30.01/18.69)	FEKMEGGITPQTyfvyNLIKSLVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.42|      31|      46|     473|     503|       5
---------------------------------------------------------------------------
  473-  503 (51.44/36.81)	NECF.NFLSQDKARIEQFDIS.FVMLVSIVQNF
  521-  552 (45.33/31.50)	NECL.VDRHMQKSPTQLLQISdPVIVEALIKQF
  553-  576 (28.65/17.01)	NSCEgDFKPNLKHKNVLFNMP.GVM........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.05|      14|      15|     349|     362|       6
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  331-  344 (25.31/16.06)	SGGKIVKWWRAKKQ
  349-  362 (24.74/15.53)	SHGPLLDLLDAKCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.53|      12|      17|      37|      48|       8
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   37-   48 (22.00/15.52)	VLPRGVSGDVYN
   53-   64 (20.53/13.98)	ILQQAVVGDGAN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32950 with Med24 domain of Kingdom Metazoa
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