<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32947

Description Uncharacterized protein
SequenceMGKSKHWANCHRMYSLADKNIPFNISKQQQEMQQQQQVQQQQMQQAQQMQQSQQQPPQPLDNISKIKSLVGPLRETLALTIKTAAQTLNQNNQIDSGSQKTPDIQIPRFDKNLEEFYSICDQIELHLKTSIKCLSQAESSNRYLNLPVMPNRSETIGMNENSLTFNMSSPVSFEIIVGTYEEYILGYIFTSNKQTIQQSFASHDHNASIRCLATNGNYLASGASDDRIIIYDLKARKEHCMLTQHESTITAVQFTNKHSHVMSASQDGALAIVRVGNWQLEKLWDKAHKEGMVVDIALHPSGKLALTLGSDGCIQTWDLVKGRKAYIINLKTKCEDPKSLEKISFSPDGTKFVLFGGNYIGIWSLEVGGAVQVITRENKVTCCIWQGNCHVLVGHEDGSMASISILTKEAEKEINRAHNGRIKAADCSEGYIVTASSTGELKVWDSEFTELCKINSGCRVTCMKITKWLGFTIKEEPQNDAETKVFHAAKPVESKVIVEYEQSSEDEHAEPKKKARDQLKNPAISGKAIKKSKKNHVKRLKDKKVGERDAVTEKKSKRKGSSGVSSTASKMSKKMKKKKKKDVAD
Length585
PositionTail
OrganismDendroctonus ponderosae (Mountain pine beetle)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Coleoptera> Polyphaga> Cucujiformia> Curculionidae> Scolytinae> Dendroctonus.
Aromaticity0.06
Grand average of hydropathy-0.605
Instability index39.56
Isoelectric point9.09
Molecular weight65513.02
Publications
PubMed=23537049

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32947
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.12|      22|      37|     524|     547|       1
---------------------------------------------------------------------------
  524-  547 (30.88/25.26)	ISGKAIKKSKKnhVKRLKDKKVGE
  564-  585 (36.23/22.12)	VSSTASKMSKK..MKKKKKKDVAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.48|      15|      37|     268|     282|       2
---------------------------------------------------------------------------
  268-  282 (26.51/18.64)	GALAIVR.....VGNWQLEK
  302-  321 (19.97/12.34)	GKLALTLgsdgcIQTWDLVK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.15|      16|      20|      27|      45|       3
---------------------------------------------------------------------------
   30-   45 (29.94/21.96)	QEMQQQQQVQQQQMQQ
   47-   62 (31.21/14.46)	QQMQQSQQQPPQPLDN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.32|      34|      39|     353|     389|       4
---------------------------------------------------------------------------
  353-  389 (50.94/54.47)	VLFG...GNYIGIwSLEVGGAVQVITRENKVTccIWQGNC
  391-  427 (51.38/37.75)	VLVGhedGSMASI.SILTKEAEKEINRAHNGR..IKAADC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32947 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DKNIPFNISKQQQEMQQQQQVQQQQMQQAQQMQQSQQQPPQPLDNISKI
2) IVEYEQSSEDEHAEPKKKARDQLKNPAISGKAIKKSKKNHVKRLKDKKVGERDAVTEKKSKRKGSSGVSSTASKMSKKMKKKKKKDVAD
18
497
66
585










Molecular Recognition Features






MoRF SequenceStartStop




1) SGKAIKKSKKNHVKRLKDKKVGERDAVTEKKSKRKGSSGVSSTASKMSKKMKKKKKKDVAD
525
585