<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32940

Description Uncharacterized protein
SequenceMAETLSGILNGIMKVDAMEEAFSCFLVHRSETERENIAKWQQELCDFFEGLNPEHLDFVLRQYLNVTSQSSRRRMQVLIELLEHCIRKGALQARKASEFIITTDQLHWSNAALWMNCFQLISDIIELVDYKGVRELMKGCCEKAKTLPLKLTSGVQPQCQILLKLVSKILDRDVCLLPGYLLTNELQKIYSECPHWTVASMFTDYVESFRPCAQMVSIIGHSQMRPVIEQSGCPDYVANPWKLDPITLRFALKGTLPYDPELTDKQVGLLRYAIQTPYSRDMISSMMNFNKQIVKPCQAIEDQLVELIIDALDRTEIDGDGTEGLWQHITSQLIYFVLFNFATFHNVVTTLVSRVQGKEVRRGRDQLMWVLLQFLSGSIQRNPVTNFFSVLKLYEALFPEHELPSPVQSEGADISLPLPNKLKAHLEFIQHLTTPSSNSFVTGTDYRVALLCNAYSTYQEFFNKPMMSLVESIQGGPKAGTPNCPLPTCPLSMTVLDSLTVHSKMSLIHSTVTQVIKLASSKSGIPLAPALVETYSRLLVYTEIESLGIKAFIAQLLPQVYKYHAWGILYTLLEMFSYRLHHIHPRYRVQLLTNLHSLAAVPQSNQTQLHLCVESTALRVITGKFSLSAPLSDFAKSRCLQDPKSIVSQESEELNRLLVLTLARAIHVTGSDGAWCHDLLVTIAQSTPHSWAPHSIECFPRPLQKFFAQHSVPQDNKQQLKKAVEEENRKWASMNNENDIMAHFGVPGAPPLFLCLVWKMLMETNHISPIVYKILERIGSRALSAHLRKLCDCLVYEFASSAGGQVVTKCIETINDMMFKYNIITIDRLVLCLALRTMEGNEAQVPSNQSLAKLKVLKSGEFRSRVTDFVRDNSPDYWNHTNWYEKHMEFLRKYPEKFAPEEQSSVINPYFSNVCLRFLPVLDIVVHRYLELYPVQKSLENLLDHVGCLFKFHDRPVTYMYNTFHCYETKLRDRPNLKRRLVSSLLSSLLTSFTEPYQQYLKTNSDDLWVPELDYYMQLTRRVVDRLNNPNSIYTTDWRFNEFPNAGAHILYITCVELMGLAAGPTSVGNGLLDKKNPPALFFAGYVIIPSKDIHSWINAIGLIMSALPISYWSVIHDRLLATLGELDSWRYDISPFRIFNFKETHLGLLENRFSYMLGLAHSIWHHAGPGQIATVPAWVAECLPSVVRTEEQFLFVCHLVGPFLQRITAVMQLTTSLYELLAQVDANQSELKHIDPICDFLYHIKYMFVGDSLRKEIEVIVRKLRSPLQYRLRAMGCKCKLTAVLILIGAAYVYIKLKRAPLEVPVIEEKWWATGPPREEDPTVRPFKINVPKEVIADLKRRLDTALPLQPPLEGVNQNYGINGELLGNIVDHWKTKYDWNKQQEFLNQFPQFQTKIQGLNIHFIHAKPKTVPQGVEVLPLLLIHGWPGSVREFYEIIPILTTPQKGRNFVFEVIAPSLPGYGFSDAAVRPGLNQAQIAQLFNKLMKRLKFDRFYAQGGDWGSAVSHDMAILYPENVIALHRNFCFAYEITNWKAYVGMYFPSLFFSEKEAAKIYPLSDAFNFIMLESGYLHIQATKPDTVGVALRESPVGLAAYIIEKFITWTDPQWKDLPDGGLTQKYTYDKLLDNVMIYWVTRSITTSARLYAEANSKSYRSLPLDKLPINVPAGCIRFSNELLYSSEVLLREQHPNLIHLSDAEGGHFAALEVPEVLAQDIIEFVGKVRTLPPKTNSKEL
Length1735
PositionTail
OrganismDendroctonus ponderosae (Mountain pine beetle)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Coleoptera> Polyphaga> Cucujiformia> Curculionidae> Scolytinae> Dendroctonus.
Aromaticity0.10
Grand average of hydropathy-0.077
Instability index43.46
Isoelectric point7.09
Molecular weight197954.89
Publications
PubMed=23537049

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
hydrolase activity	GO:0016787	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32940
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.57|      39|      65|     417|     456|       1
---------------------------------------------------------------------------
  417-  456 (63.63/50.41)	PLPNKlKAHLEFIQHLTTPSSNSFVTGTDYRVALLCNAYS
  485-  523 (64.93/46.32)	PLPTC.PLSMTVLDSLTVHSKMSLIHSTVTQVIKLASSKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.26|      37|     461|     763|     800|       2
---------------------------------------------------------------------------
  763-  800 (59.32/51.15)	ETNHISPIVyKILERIGSRALSAHLRKLCDCLVYEFAS
 1231- 1267 (64.94/49.92)	ELKHIDPIC.DFLYHIKYMFVGDSLRKEIEVIVRKLRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     217.83|      72|     461|     527|     604|       3
---------------------------------------------------------------------------
  527-  603 (111.54/96.87)	LAPALVETYSRLLVYTEIESLGiKAFIAQLLPQVY...KYHAW..GILYTLLEM..FSYRLHHIH..PRyRVQLLTNLHSlaaVPQ
  634-  714 (106.28/70.44)	FAKSRCLQDPKSIVSQESEELN.RLLVLTLARAIHvtgSDGAWchDLLVTIAQStpHSWAPHSIEcfPR.PLQKFFAQHS...VPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     301.19|      96|    1282|     177|     354|       4
---------------------------------------------------------------------------
  184-  291 (149.46/204.91)	NELQKIYSECPHW..TVASMFTDYVESfRP..CAQMVSIIghsqmrPVIEQSGCPDYVANPWKLDPItLRFALKG.TLPYD...PELTDkqVGLLRYAIQTPYSRDMISSMmnFNK
 1382- 1485 (151.73/66.92)	NKQQEFLNQFPQFqtKIQGLNIHFIHA.KPktVPQGVEVL......PLLLIHGWPGSVREFYEIIPI.LTTPQKGrNFVFEviaPSLPG..YGFSDAAVRPGLNQAQIAQL..FNK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32940 with Med23 domain of Kingdom Metazoa
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