<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32911

Description Uncharacterized protein
SequenceMVAVLEVISSLEKYPITKEALEETRLGRLINEVRKKTSNEELAKRAKKLLRNWQKLIEPVTQNEPVPRGLPNPPGSANGGAHNCKPDSQLPALPGAKPISELKSRNDIQKLNSPKTEKLGNRKRKGDHRDGHQGPPPPKVSKASHEVLQNSSPPPTNGIGGSPENFPSPVDINLHAGPESSRTDLSENDKHNKIPVNAVKPHTSSPGLVKPSSTSSLLKTAVLQQHDKSEEATGPHQPKSPRCSSFSPRNVRHDTFARQHSTYSPKDSMPSPSQRPQLADAAQVPSPPPSLMQPSSPPLPAKRLEFPPQAAPEAQQHWQEQQGAPEGQHRHTAGTLQQHTAPGCKGHPGESQLGFPQDTSRMDSDDAASGSDSKKKKRYRPRDYTVNLDGHETDGGVKPVRLKERKLTFDPMTGQIKPLTPKDPLQVESPALTEQHRTETEKQEQKPNLQSPFEQTNWKELSRNEIIQSYLNRQSSLLSSSGVQTPGAHYFMSEYLKQEESTRKEARKTHVLAPNSKPTDLPGVTREVTGDDLDRIRDHKWPGVNGCFDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
Length581
PositionUnknown
OrganismFicedula albicollis (Collared flycatcher) (Muscicapa albicollis)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Passeriformes> Muscicapidae> Ficedula.
Aromaticity0.04
Grand average of hydropathy-1.061
Instability index61.32
Isoelectric point8.93
Molecular weight64272.93
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32911
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     566.20|     123|     132|     125|     255|       1
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   30-   88 (42.82/ 9.62)	............................................................................INEVRKKTSNEELAK..R...AKKLLR.....NWQKLIEPVTQNEP.V.PRGLPNPPgsanggaHN.....CKPDS
  125-  255 (202.94/84.60)	KGDHRDGHQGP.PPPKvskashEVLQNSSPP.PTNGIGGSPENFPSPVD..INLHAGPESSR.TDLSENDKHNKIPVNAVKPHTSSPGLVKPSS...TSSLLKTAvlQQHDKSEEATGPHQPKS.PRCSSFSP.......RN.....VRHDT
  275-  393 (159.02/57.15)	RPQLADAAQVPsPPP.......SLMQPSSPPlPAKRLEFPPQAAPEAQQhwQEQQGAPEGQH.RHTAGTLQQHTAP..GCKGHPGESQLGFPQD...TSRM.......DSD..DAASGSDSKKK.KR...YRP.......RDytvnlDGHET
  408-  531 (161.43/58.12)	TFDPMTGQIKP.LTPK......DPLQVESPA.LTE..QHRTETEKQEQK..PNLQSPFEQTNwKELSRNEIIQSY.LNRQSSLLSSSGVQTPGAhyfMSEYLKQE..ESTRKEARKTHVLAPNSkPTDLPGVT.......RE.....VTGD.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32911 with Med26 domain of Kingdom Metazoa
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