<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32889

Description Uncharacterized protein
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAATAAPAGATTTAVSQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNSGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIMLASASFDSTVRLWDVDRGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGTLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length523
PositionTail
OrganismFicedula albicollis (Collared flycatcher) (Muscicapa albicollis)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Passeriformes> Muscicapidae> Ficedula.
Aromaticity0.07
Grand average of hydropathy-0.295
Instability index36.66
Isoelectric point5.40
Molecular weight56551.35
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32889
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     385.66|      40|      40|     331|     370|       1
---------------------------------------------------------------------------
  168-  207 (45.75/20.44)	....PN..KatVLRGHESE...........VFICAWNPVS.........dlL.ASGS.GDSTARIWNL
  228-  262 (47.00/21.17)	GHDVP......S....NKD...........VTSLDWNSDG.........tlL.ATGS.YDGFARI.WT
  263-  293 (36.96/15.30)	EDGNLA..S..TLGQHKGP...........IFALKWNKKG..........nY............ILSA
  294-  345 (47.45/21.43)	GVDKTT..I..IWDAHTGEakqqfpfhsapALDVDWQNNT..........tF.ASCS.TDMCIHVCRL
  346-  387 (65.98/32.26)	GCDRPV..K..TFQGHTNE...........VNAIKWDPSG.........mlL.ASCS.DDMTLKIWSM
  388-  435 (51.75/23.95)	KQDTCV..H..DLQAHSKE...........IYTIKWSPTGpgtsnpnsnimL.ASAS.FDSTV...RL
  437-  480 (54.16/25.36)	DVDRGVciH..TLTKHQEP...........VYSVAFSPDG..........kYlASGS.FDKCVHIWNT
  481-  518 (36.60/15.10)	QSGTLV..H..SYRG.TGG...........IFEVCWNARG........dkvG.ASASdGSVCV.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.62|      19|      22|     122|     142|       3
---------------------------------------------------------------------------
  122-  142 (25.81/21.90)	GAttTAVSQQNTPKNGEATVN
  147-  165 (30.81/19.18)	GA..HAINNHSKPMEIDGDVE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32889 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APAGATTTAVSQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKAT
119
172










Molecular Recognition Features






MoRF SequenceStartStop




NANANA